Pseudoliparis swirei (Mariana hadal snailfish): 130209934
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Entry
130209934 CDS
T09868
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04010
MAPK signaling pathway
pswi04020
Calcium signaling pathway
pswi04510
Focal adhesion
pswi04518
Integrin signaling
pswi04540
Gap junction
pswi04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130209934 (pdgfrb)
04020 Calcium signaling pathway
130209934 (pdgfrb)
09133 Signaling molecules and interaction
04518 Integrin signaling
130209934 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130209934 (pdgfrb)
04540 Gap junction
130209934 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
130209934 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pswi01001
]
130209934 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
pswi04090
]
130209934 (pdgfrb)
Enzymes [BR:
pswi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
130209934 (pdgfrb)
Protein kinases [BR:
pswi01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
130209934 (pdgfrb)
CD molecules [BR:
pswi04090
]
Proteins
130209934 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
Adeno_E3_CR1
C2-set_2
AMP-binding_C_2
VEGFR-1-like_Ig-like
RIFIN
Ig_VEGFR-1-like_5th
Adeno_E3_CR2
C2-set_3
Motif
Other DBs
NCBI-GeneID:
130209934
NCBI-ProteinID:
XP_056295842
LinkDB
All DBs
Position
19:complement(13588736..13613906)
Genome browser
AA seq
1103 aa
AA seq
DB search
MRRVTASMLHLTVTVTALLFFCTKLRCLEITPDDKELVLAEGSSLTLTCSGSEDTTWEFK
RDHVPYFQAEQVQNDGQSYQIVQSSVTSSVLTLWNVSWTHTGVYQCTDLLTGETKEVAVF
VPDPDVWFIESSHGMVTKTSEESTIPCVVTNPNITVTLFEKETDLPIEGLYVPSEGYKAL
LEDRTYVCRGELNNEVKESQAFNVFSIAVPEAIDAYINASKTILIQGEPLTVNCTVHGVE
LVYFSWDFPNRDVVDVEPLTDFLPLMTMRSCLIFPSATVAHSGHYVCHVEESTQDQRASA
SIDITVLERGFVDVKTAPQKNISAKLQENVQLRVEIEAYPPPQVRWSKDGASIKGDKTIT
TRREHGIRYVTLLTLVRVRKEQKGRYSVLVTNGDDTKEVTFDLEVQVPSQIKDLTDHHLP
GKRHLVTCVAEGVPTPTIQWYSCDSMHRCSNQTALWQPLIPELEVLSIRTNVTYSETHKT
SQVRSQVTFHKPQQVTVRCETSNQAGLVDRRDVKLVSSTLYSQVAVLAAVLALVVIIIIS
IIVLVAVWRKKPRYEIRWKVIESVSQDGHEYIYVDPIHLPYDLAWEMPRDNLVLGRTLGS
GAFGRVVEATAYGLGHSQSSTKVAVKMLKSTAKRSETQALMSELKIMSHLGPHLNIVNLL
GACTKNGPLYLITEYCRYGDLVDYLHRNKHTLLQDKPEKNQDDGCLISGGSTPLSQRKGY
VSFGSESDGGYMDMSKDEPTIYMPMQEQMDTIMYADIQPSAYESPYQQDIYQEQGGSRLD
LAISDSSTLTHDDLLGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLAR
DIMHDSNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYSILLWEIFTLGGTPYPDLPM
NELFYSALKRGYRMAKPAHATDEVYDIMKKCWDEKYEKRPEFSFLVHSVGNMLADSYKKK
YSQVNDDFLKSDHPAVTRTKPRLSSPFPIANPAIGAPSPHYLPPDTYNQSLSPGEYRQEA
DTQEVRTSNNEYIIPIPDPKPEDVFPDMPSESPASSLALEEEIDATSRDTADTLPEEDRL
EETNERDALLGLSGTPEVEDSFL
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgaggagggtgacggcatccatgctccatctgactgtcacagttacagctctacttttt
ttctgcaccaagctgcgttgtctggagatcacgcccgatgacaaggagctcgtcctggct
gagggctcctctctcaccctcacgtgctccggctcagaagacacaacgtgggagttcaag
agggaccatgtgccgtacttccaagcggaacaagttcaaaacgatggtcaaagctaccaa
attgtgcaaagcagcgtcacatccagtgttttgaccttgtggaacgtgagctggacacac
acgggagtgtatcagtgcaccgacctactcactggagaaactaaggaggtggctgttttt
gtcccagaccctgatgtgtggttcatcgagagctcacacggcatggtaacaaagaccagt
gaggagagcaccatcccctgcgtggtgaccaatcccaacatcactgtcaccctgtttgag
aaagagacggatctgcccatcgaggggctttatgttcctagtgaggggtacaaggcactg
ctggaggacaggacctatgtgtgtcggggagagctgaacaacgaggtgaaagagtctcag
gccttcaacgtcttcagcattgcggtccccgaggccatcgacgcctacatcaatgcgtca
aagaccatcctgatacagggagaaccgctgacagtaaactgcacagtgcacggagtggag
ctggtgtatttttcctgggatttccccaacagagatgttgttgatgtggagccactgaca
gacttcctgcctctcatgaccatgcgatcctgcctgatcttccctagtgccacggtggcc
cacagcggacactacgtctgccatgtcgaagagagtacccaagaccagagggcctctgcc
agcatcgacatcactgtgctcgagcgaggcttcgtggatgtgaagactgctccgcaaaaa
aatatttcagccaagctgcaagagaacgtgcagttgagagtggagattgaggcctatcct
cccccccaggtccgctggagcaaagacggcgcctcaatcaagggagataaaaccatcaca
accagacgagagcatgggatcaggtatgtcactctgctcaccttggtgagagtgaggaag
gagcagaaaggccgctactctgtccttgtcacaaacggagatgacacaaaggaagtgacc
tttgacctggaggtccaagttccctctcagattaaagacctgactgaccaccacctccct
gggaaaagacacttggtgacctgtgtcgctgagggggtcccaaccccgaccatccagtgg
tacagctgtgacagcatgcaccggtgtagcaaccaaacagcgctgtggcagccgctgata
ccagagctggaggtgctgagcatccggaccaatgtcacctacagcgagactcacaaaacc
agccaggtgcggagccaggtgaccttccacaagccccagcaggtcaccgtgcgctgtgag
accagcaaccaagcaggactcgtcgacagaagagacgtcaaactggtgtccagcacactc
tactcccaggtggcagtattggctgctgttttagccttagtggttattattatcatatct
atcatcgtcctcgttgctgtgtggagaaagaaacctcgctatgagatcagatggaaggtg
atagagtcagtgagccaggacggtcatgagtacatctatgtggaccccatccacctgccc
tacgacctggcctgggaaatgccaagagacaacctggtgctcggtcgcactcttggatca
ggagcctttggcagggtggtcgaggccactgcatatggtctcggtcattcccagtccagc
acaaaagtggccgtgaaaatgctaaaatctacagccaagaggagtgagactcaggctctg
atgtcagagttgaagatcatgagtcacctgggtcctcacctcaacatcgtcaacttgctg
ggagcttgcaccaaaaatggacctctgtatctgattacggagtactgtcgctatggcgac
ctggtggactacctgcacaggaacaagcacaccctcctgcaggacaagccagagaagaac
caagacgacggctgcctcatctctggagggagcactccgctcagccagaggaaaggctac
gtgtcctttggaagtgagagtgatggaggatatatggacatgagtaaagacgagcccacc
atctacatgcccatgcaggagcagatggacaccatcatgtacgcggacatacaaccctct
gcatacgagtcgccctaccagcaggacatctatcaggaacaaggtggcagcagactggac
ctggccatcagcgactcctccactctcacccacgacgacctgttgggcttcagctatcaa
gtggcaaaggggatggagtttctcgcctccaagaattgtgtccatagggaccttgctgcc
aggaatgtgctgatctgcgagggcaaactggtgaagatctgtgactttggcctggccaga
gacatcatgcatgattccaactacatctctaaaggcagcaccttcttgcccctgaagtgg
atggcaccagaaagtattttccataatttgtacaccaccctgagcgacgtgtggtcatac
agcattcttctgtgggagatcttcacactgggaggaaccccttaccctgacttgcccatg
aatgagttgttctacagtgctttgaagcgaggctaccggatggccaaacctgcacacgcc
actgatgaagtttatgacatcatgaagaagtgctgggacgagaagtatgagaaaaggccg
gagttctccttcctggtccacagcgttgggaacatgctggccgacagctataaaaagaaa
tacagccaagtcaatgacgacttcctgaagagtgaccacccggcagtcactcgcaccaaa
cccagactctcctccccctttccgatcgccaacccagccattggcgccccttccccccat
tacctccccccggacacctacaaccagagcctgagccccggagaataccgacaagaggca
gacacacaggaagtcagaacttcgaacaacgaatacatcattcccatccccgaccctaag
ccagaggacgttttccctgatatgccgtcagaaagccctgcaagctctctggctctggag
gaggagatcgacgccacgtcgcgagacacggcggacactctcccggaggaggacaggctg
gaggagaccaatgagagagacgctctgttgggtctttctggtacacctgaggtagaagat
agcttcttgtag
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