Pseudoliparis swirei (Mariana hadal snailfish): 130210074
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Entry
130210074 CDS
T09868
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130210074
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Protocadherins
130210074
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
130210074
NCBI-ProteinID:
XP_056296033
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Position
19:15007136..15009829
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AA seq
823 aa
AA seq
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MTKTMGCRDWRWWALWWHHLFLLWSTIDAQTRYSIPEELEQGSVVGNLAKDLGLGLSDIF
DRKLRVASEAGKQYFSVDAGKGELVVNDRIDRETLCGHSASCVVPLQVVIENPLQLHRIE
VEIKDVNDNAPSFLKSDHIIEIAESTVVGVRFPLESAEDPDVGSNGLKTYTISKDECFLL
KVKEIENGRKIPELVLNRSLDREKKAIHNLFLTAMDGGNPVKTGTSKITVNVLDNNDNVP
LFENTVYKVAVQENSANGSFVITTKATDIDEGPNGEIEYSLGIHTPPAVLSLFHIDAVTG
DIFLRNQLDHETQPSFRIDISAKDKGSPKMEGHCSVQVDVLDVNDNHPEIVLTSKPTSVP
EDSRSGTVVALLGVRDFDSGDNGKVTLTLPKKSPFTLKPSFSNNYALVTSGPLDRESFSE
YNIEITATDSGSPPLSSKKTIPISITDVNDNPPVFTQPSYNVYLKENGVPGSILYSVSAS
DLDFGENAKISYSILDSKVQDVSVSSYVYINSDNGSIYSMHSFDYEKLKVFQIQVQAKDQ
GSPSISSNATVHVFILDQNDNAPAVIYPSSAALGSLSHQRMPRSAKAGHLVTKLTAVDAD
SGHNAWISYKLTEATDASLFTVNLYTGEVRTKRAASEQDESSQRLLIEIKDDGEPVQSAT
VTVSILLEDGLQEPILDLRQKVSEPSRKTGRITLCLILSLASVSVLSLVTFLILAVKCMR
SSRSSDSCCMTRSDCDTYKNPNRNLQLQLNTDGLIKYVEVPGGDMMSQSQSFRSCMSPMS
EYSDFTLIKPSSTTDFNEVISVLDASLPDSTWTFESQQVSRKQ
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagacaatgggatgccgagactggagatggtgggcgctctggtggcatcattta
ttcctcttgtggagtacaatagacgcacagactcgttacagcatcccggaagagttggaa
cagggctctgtggtcggaaatttagccaaagatctgggtttgggactatcggacattttt
gaccgtaaactgcgtgtcgcctctgaggctggtaagcagtatttcagcgttgatgcgggg
aagggcgagctggtggtgaacgacagaatagacagagagactctatgtggacacagcgcc
agctgtgtggtacctctgcaggttgtaatagagaacccgctacagctacaccgaatagaa
gtggaaataaaagacgtaaatgacaatgctcctagttttctcaaaagcgatcacattata
gaaattgctgaatccaccgtagttggtgtgcgttttcctttagagagtgcagaggatccc
gatgttgggagtaacggattaaagacgtacacaataagcaaagatgaatgcttcctttta
aaagttaaagaaattgaaaatgggcgtaaaatacctgaattagttttgaatagatcattg
gatcgagagaaaaaagctattcacaatttatttcttactgctatggatggaggaaatccg
gttaaaacgggaacttcaaaaataactgttaatgtgcttgataataatgacaatgtcccg
ttatttgagaatactgtctataaagttgctgttcaagaaaacagtgcaaatggctccttt
gtaattacaacaaaagcaacagacatagatgagggtccaaatggagagattgagtactca
cttggtatacacacacctccagcggtgttgtcattatttcatattgacgctgtaacggga
gatatatttttgagaaaccagctggaccacgaaactcaaccctcatttcgaatagatatt
agtgcaaaagacaaaggctcgcctaaaatggagggtcactgcagtgtacaggtggatgtc
ttagatgtaaacgataaccatccagaaattgtcctgacttcaaaacctacttctgtgccc
gaggactctcgcagtgggactgtcgtggctttactcggcgtccgtgactttgactccggt
gataacggtaaagttacattaacacttccaaaaaagtctccttttactcttaaaccctct
ttttctaataactatgcgctggttaccagtggtcctttagaccgagagagtttctcagag
tataatatagagataacagccactgattcaggctctcctccgctgtcgagtaagaaaacg
atacctatcagcatcactgatgtgaatgacaacccccctgtattcactcagccctcctat
aatgtgtatttaaaagagaacggggtaccaggctctatactgtactcagtttcagcatcg
gacctggactttggtgaaaacgcaaaaatctcttattccatcctggactctaaagtgcag
gacgtgtctgtctcctcgtatgtttacattaactcagataacggcagcatctacagcatg
cactcgtttgactatgagaaactgaaggtgtttcagattcaggtccaggcaaaggatcag
ggctctccgtccatcagcagcaacgccactgtccatgttttcatcctggaccagaacgac
aacgcccccgctgttatttacccctcctccgctgccctgggctccctctcccatcagagg
atgccccgctccgctaaagcgggacacctggtcactaagctgacggccgtggacgctgac
tcgggccataacgcctggatctcctacaaactaacggaggccaccgacgcctctctgttc
acggtcaatctgtacacaggggaggtgaggactaagcgcgctgcgtcggagcaggacgag
tcctctcagaggctgctcattgagatcaaggacgacggggaaccggtccagtccgccacc
gtcacggtgtccatcctgctggaggacggactccaggagcccatcttagacctccgacag
aaagtgtccgagcccagcaggaaaactgggagaatcactctgtgtttgattctctctctg
gcctcggtgtccgtgctctcgctggtgacgtttctcatcttagcggttaaatgcatgagg
agcagcagaagcagcgacagttgctgcatgacacggagcgactgtgatacttacaagaac
cccaacagaaacctgcagcttcagctcaacactgatgggctgataaagtacgtggaggtc
ccgggaggagacatgatgtctcagagtcagtccttcaggtcctgtatgtctccgatgtca
gagtacagcgatttcactttgattaaaccaagcagcacgactgactttaacgaggtgatc
agtgttctggacgcgtccctacccgacagcacctggacctttgagagccagcaggtgagc
agaaaacagtag
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