Pseudoliparis swirei (Mariana hadal snailfish): 130213000
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Entry
130213000 CDS
T09868
Name
(RefSeq) spectrin family protein isoform X1
KO
K23932
spectrin beta, non-erythrocytic 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04517
IgSF CAM signaling
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
130213000
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130213000
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pswi04812
]
130213000
Cytoskeleton proteins [BR:
pswi04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
130213000
Intermediate filaments
Intermediate filament-binding proteins
130213000
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
PH_11
CH_2
YJL133C-A_C
Motif
Other DBs
NCBI-GeneID:
130213000
NCBI-ProteinID:
XP_056300345
LinkDB
All DBs
Position
3:complement(8907469..8952772)
Genome browser
AA seq
2376 aa
AA seq
DB search
MSTISPTDFDSLEIQQQYNDINNRWDLAAETDWDNENGSARLFERSRIKALADEREAVQK
KTFTKWVNSHLGRVTSRIGDLYTDLRDGRMLIRLLEVLSGEQLPKPTKGRMRIHCLENVD
KALQFLKEQKVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVEMGDNKQKKSAKE
ALLLWCQMKTAGYPNVNIHNFTTSWRDGLAFSAIVHKHRPDVIEFDNLKRSNAHHNLQNA
FNVAEKDLGLTKLLDPEDVNVDQPDEKSIITYVATYYHYFSKMKALAVEGKRIGKVLDYA
LEADQLIEKYETLASELLRWIEQTIGTLNDRQLANSLNAVQNQLQAFNSYRTVEKPPKFT
EKGNLEVLLFTIQSKMRANNQKVFMPREGKLISDINKAWERLEKAEHERELALRNELIRQ
EKLEMLAARFDRKAAMRETWLSENQRLVSQDNFGTDLGAVEAATRKHEAIETDIGAYLER
VAAVEAVAKELEAERYHDVRRVIARRDNVLRLWEYLKELLAARRERLNAHRDLQRLFEEM
RYIMDWMADMTGRLQSPDSGKHLHDVLDLLQKHTLVEADISAQAERIKAVQGAAQRFTSH
EQAYKPCEPGLVGEKVDLLGQAYEELGQLAGKRRVRLEDSLRLWQFLWDVGEEAAWIREQ
EQILASGDCGRDLTSALHLLSKHEAFSDEMAARYGPLSNSIAAGEALVEEGHFGAPEVTE
RIEDIRAQWAHLEETTKLRELSLKEAAALHQFQTDANDMEAWIMETLRQVSSQEVGHDEF
STQTLARKQREVEEEIQSHRPGIDSLHEQVEALPQAYIHYPQVDGRLPAIEQSYEELESL
SATRRRALEGALALYRMFSEAGACQLWVEEKEQWLDGMEIPTKLEDLEVVQQRFETLEPE
MNNLGTRVTDVNQVAEQLLSSDNCNKDQIHQTRDQLHNRWKEFEQMAGQKKIALQSALNI
QNYHLECNEIQTWMKEKTKVIESTQSLGNDLAGVMALQRKLTGMERDLEAIQGKLDDLRN
EAEQLAIEHPDQAGEIQGHLAGIQDVWKELNATMKRREESLGEASKLQGFLRDLDDFQSW
LSRTQTAVASEDIPTSLPEAETLLTQHESIKNEVDNYKEDYEKMRALGEEVTQGQTDAQY
MFLAQRLQALDTGWHELRRMWENRHSLLAQAFDFQNFLRDAKQAEAFLNRQEYVLSHTEM
PTSLQGAGEAIKKHEDFLTTTEASEEKITGVVEAGQRLINDSNANSDKIQEKVDSIQERH
VKNKEAANALLAKLKDNRELQRFLQDGQELTLWINEKMLTAQDMSYDEARNLHSKWQKHQ
AFMAELASNKDWLDKIDTEGQALVAEKPELKPVVQQTLEDLQREWEELEGTTRTKAQCLF
DANRAELFTQSCSALDGWLKNLEGQLHSDDYGKDLTSVNILLQKHQMLEHQMEVREKEVE
SLQSQAVALSQEDAGIVEVDGQQRRVTDNFSSLQDPLKLRRHRLLASKEAHQFNRDLEDE
ILWVKERMPLAASKDHGKDLPTVQLLSKKNQTLQKEIQGHQPRIDDIHRRGQTQSQVDGE
RQSVLEERLVELRDLWDQLMAETDNRHARLIEANRAQQFYADAAEAEAWMGEQELHMMSE
EKAKDEQSALVMVKKHQTLEQALEDYAQTIHQLANSSRTMVNGEHPESERITLRQAQVDK
LYAGLKDLAEERRGRLQERLRLTQLKREVDELEQWIAEREVVAGSHELGQDYEHVTMLRD
KFREFARDTSTIGQEHVDGVNGLADDLIESGHPENASVAEWKDGLNEAWADLLELIDTRT
QMLAASYELHRFHQDATEVLGRVKEKREGLPSDLGRDLNTVQHLHRQHNTFENDIQALSG
QVNQVQDDAARLQKAYAGEKADDINRSENTVTSAWEGLLEAGQARRLLLLDTVEKFRFFN
MVRDLMLWMDGVNLQIDAHDSPRDVSSAGLVIANHLDIKSEIETRADSFTACNEMGNSLI
NNNHYAADEIREKLAQLQEKREKINNKWQDKMDHLQIVLEVLQFGRDAHVAESWLAGQEP
LVRAAELGSNVDEVESLIKRHEAFEKLAVAWEDRFVLLEKLTTLEEHEIQKRREEEERAR
RPPTPPPVEVAQSETESHVHDSAARTSLDQTTLNQSVSVNGVHSDNDTSQRSLSLSLSVG
KKSEPKGVCKPKEPERSSETESVNGPGRDSGLASSRLEPSATLPGRAGAEPDAMEGMLNR
KQEMETHSKKAPSRSWQNVYCVLRKGSLGFYKDGKSASSGIPYHGEVPISLGEAVCEVAN
DYKKRKFVFKLRLGDGKEYLFQAKDEAEMSSWIRSIIGAIPAGSADSPVGPRALSRAMTM
PPISPNAGEAGGVTMRNKDGKEKDRERRFSFFGKKK
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccatctcaccgacggacttcgacagcttggagatccagcagcagtataatgac
atcaacaaccgctgggacctggcagcagagactgactgggataatgagaacggttcagca
cgcctcttcgagcgctcacgcatcaaggccctcgcagatgagcgtgaagcggtccagaag
aagacctttaccaaatgggtaaactctcacttaggccgagtgacgagtcgcattggtgac
ctgtacaccgacctgcgtgatggccgcatgctaatccgccttctggaagtgctctcggga
gaacagctgccaaagcccactaagggccgcatgcgtatccactgcctggagaatgttgat
aaagccctgcagtttctaaaggagcaaaaagtccatctagagaacatgggttcacatgac
atagtagatgggaatcaccgtctcaccctgggtctcatctggaccatcatccttcgcttc
cagatccaggacattagtgtggagatgggggacaacaagcaaaagaagtccgccaaagag
gccctgctgctttggtgccaaatgaaaactgctggataccccaatgtcaacatccacaac
ttcaccaccagctggagagatggcctggcgttcagtgccatcgttcacaaacacagaccc
gacgtgattgagtttgacaacttgaagaggtccaacgctcaccataatctccagaatgct
tttaatgtggctgagaaggatcttgggctcaccaagctgctggacccagaagatgttaat
gttgatcaacctgatgaaaagtcgatcattacctatgtggcgacctattaccattacttc
tcgaagatgaaagccttggcagtggagggcaaacgaattggcaaggtactggactatgct
ctcgaggctgaccaactgatagagaagtatgagacccttgcctcggagctgctgcggtgg
attgagcagaccatcgggacgcttaatgatcggcagctggctaactcactgaatgctgtg
caaaaccagctgcaggcgtttaactcctaccggactgtagagaaaccccccaaatttaca
gagaagggaaacttggaagttctcctcttcactatccagagcaagatgagagcaaacaat
cagaaagtcttcatgccaagagagggaaaactcatctctgacatcaataaggcatgggag
cgactggagaaggccgagcatgaacgagagctggcactgaggaatgagttgattcgtcag
gagaagctggagatgctcgctgcacgttttgaccgcaaagcagcgatgcgggaaacgtgg
ctgagtgagaaccagaggctggtgtctcaggacaactttggaactgacttgggagctgtg
gaagcggccactcgcaaacatgaagcgattgagacggacattggggcatatttggagcgt
gtggctgccgtggaggccgttgccaaagagctggaagctgagaggtaccacgatgtgcgc
cgtgtaattgcacggagggacaatgtgctgcgtctctgggaatacctgaaagagctgctg
gcggcacgcagagagcggctgaacgcccatcgtgaccttcaaagactgtttgaggagatg
cgctacatcatggactggatggcagacatgacgggtcgtctgcagtctccggacagtggc
aaacatttgcacgatgtgttagacctgctgcagaaacacactctggtagaggctgacatt
tcagctcaggcggagaggatcaaggcagttcagggagcggcacagcgcttcacttcccat
gaacaggcctacaaaccgtgtgagccgggactagtcggtgagaaggttgacctcctcggt
caagcctatgaggagctgggtcagcttgctgggaaacgcagagtgcgccttgaggattca
ctccgcctgtggcagtttctgtgggatgtgggagaagaagccgcctggatcagagagcag
gagcagatcctggccagtggagactgtggccgtgacctcacttctgcccttcacctgctc
agcaaacacgaggccttcagtgatgagatggcggcacgttatggccccctgagcaacagc
attgctgccggagaagctttggttgaggagggacactttggagccccagaggtcaccgaa
aggattgaagacatccgtgcacagtgggcacatctggaggagacaactaagctcagagag
ctgagcctcaaagaagctgcggccctgcaccagtttcaaacggatgccaatgacatggag
gcatggatcatggagacacttagacaggtgtcaagtcaggaagtgggccatgatgagttc
tccacccaaactcttgctcgcaagcagagggaggtagaggaggagatccagagtcaccgc
cccggcatcgactccctgcatgagcaagtcgaggcactgccacaggcctatatacattac
cctcaggtggatggccgcctacctgctattgagcagagttatgaagaactggagtctctg
tcggccactcggcgccgggctctggaaggagccctggccctctaccgcatgttcagtgaa
gctggtgcctgccagctctgggtggaggaaaaggagcagtggttagatggcatggagatc
cctaccaaactggaggacttggaggtggtgcaacagagatttgagaccctggaacctgag
atgaacaacctgggcactcgtgtcactgatgtgaaccaggtggccgagcagctgctgagc
tccgacaactgtaacaaagaccaaatccatcagacacgagaccaactgcacaacaggtgg
aaggagttcgaacaaatggctggccaaaaaaaaatagcccttcagtcggcccttaacatt
cagaactaccacttggagtgtaatgagatccaaacttggatgaaggaaaaaaccaaagtg
attgaatccacccagagcctgggcaatgacctggctggtgtgatggcactgcaacgcaaa
ctcactggcatggagagggacctagaggccattcagggcaaactggatgacctgagaaac
gaggctgaacaactggccatcgaacatccagatcaggcaggagagattcaaggacacctg
gcagggattcaagatgtgtggaaggagttgaacgccaccatgaagcggcgcgaggagtca
ctgggcgaagccagcaagctgcagggtttcctccgggatctggatgactttcagtcctgg
ctgtcccgcacccagacagccgtggcctcagaggacattccaacctctctgcctgaggct
gagactttgctaacccagcatgagagtattaagaatgaggtggataactataaggaggac
tacgagaagatgcgagcgctcggtgaggaggtgacccaaggccagacagatgcccagtac
atgttcttggcccagagactccaggcactggacactggctggcatgagttgcgtcgcatg
tgggagaaccgccacagcctcttggcccaggcctttgacttccagaatttcttgagggac
gcaaagcaggcagaggctttcctcaacagacaggagtatgtgctgtcccacaccgaaatg
cccaccagtcttcaaggagcaggggaggccattaagaagcacgaggatttcctcacgaca
acggaggccagtgaggagaagataactggcgtggtggaggccggacagcgcctcattaat
gacagcaacgcaaactctgataagatccaggaaaaagtcgactccatccaggaaaggcat
gttaagaataaagaggctgcaaatgcattgctggctaagcttaaagacaaccgggaactg
cagcgcttcctccaagatggacaggagctcacgttgtggataaatgagaagatgctgacg
gcacaggacatgtcttatgatgaggccagaaatctccacagcaagtggcagaagcatcag
gccttcatggccgagctggcctccaacaaagactggctggacaaaattgatacggagggt
caggcactggtggccgagaagccggagctaaaacctgtggttcagcagaccctggaggac
ctccagcgtgagtgggaggagctggagggcaccacccgcaccaaggcccagtgcttgttc
gatgctaaccgggcagagctctttacacagagctgctctgctctggatggctggctgaaa
aaccttgagggtcagctgcatagcgacgactatggcaaagatttgaccagtgtcaacatc
ctgctccagaagcaccagatgctggagcaccagatggaggtcagagagaaggaggtggag
tcccttcagtctcaggctgtggccctgtcccaggaagacgctggaattgtcgaggtagat
ggtcaacaaaggcgtgtcactgacaacttctccagccttcaggaccctctcaaactaagg
agacatcgactcctggcctccaaagaagcacatcaattcaacagagatctggaggacgaa
attctttgggtgaaagagaggatgcccctggcggcctccaaagaccatggaaaagacctg
cccaccgtacagctgctaagcaagaagaaccagacattgcagaaggagatccagggccac
cagcctcgcatcgatgacatccatagacgaggccagactcagagccaggtagatggcgag
agacagtctgtcctggaggagcgactcgttgagctgcgggacctgtgggaccagctgatg
gccgagacagacaatcgccatgcccgtcttatagaggcaaatcgcgctcagcagttctat
gctgatgcagcggaggcggaggcctggatgggagaacaagagctacacatgatgtcagag
gaaaaagccaaggatgagcaaagtgcactagtgatggtcaagaagcaccagaccctggaa
caggcacttgaagactacgcccaaaccattcaccaacttgccaacagcagccgcaccatg
gtcaacggtgaacacccggagagcgagagaatcaccctacggcaagcccaagtggacaaa
ctgtatgccgggttgaaagacctcgctgaggagcgtcgtggtcgacttcaggagagactg
cgactgacccagctaaagcgggaggtggatgaactggaacagtggattgctgagagggag
gtggtagccggctcccatgaactaggacaggactatgaacatgtcacaatgcttcgggac
aagttccgtgagtttgctcgtgacaccagcaccattggccaagagcatgtagatggtgtg
aatggccttgcagatgacctgattgagtcgggtcatcctgaaaacgctagtgtggctgaa
tggaaagacgggttgaacgaggcttgggctgatctgctggagctgatcgacacacgcaca
caaatgttagcagcctcctatgagttgcaccgcttccatcaagatgccacggaggtgctc
gggcgtgttaaggagaagagggaagggctgccttctgaccttggccgtgatctgaacacc
gttcagcatctacacagacagcacaacactttcgaaaatgacatccaggccctcagtgga
caggtgaatcaagtgcaagatgatgcagcacggctgcagaaggcttacgctggggagaag
gcggacgacattaacaggagtgaaaatactgtgacttctgcctgggagggcctgcttgag
gctggtcaggcccgcaggctcctcctgctggacactgtggagaagttccgcttcttcaac
atggtgcgagacctgatgctctggatggacggtgtcaatctgcagatagatgcacacgac
agccccagggatgtgtcttctgcagggctggtcattgccaatcatctggacatcaagtct
gagattgagaccagggcagacagctttactgcctgtaatgagatggggaattctctcatc
aacaataatcactatgcagctgatgagatccgggagaaactggctcaactccaggaaaag
agagaaaagatcaacaacaagtggcaagacaagatggaccatttacaaattgtactggag
gtgttgcagtttggacgtgatgcccatgtggcagagtcttggttggcagggcaagaacct
ctggtgcgcgctgcagagctgggctcaaatgtggatgaggtagagagcctaattaagcgc
catgaggcctttgagaaacttgctgtggcctgggaggaccgctttgtgctgctggagaaa
ctgactactcttgaggagcatgagatccagaagaggcgagaggaagaagagagagcaagg
cgaccccctacaccacccccagtagaagtggcacaatctgaaacagaaagtcatgtccat
gactctgcagccagaaccagtctggaccagactaccctcaatcagtctgtgtcggtgaat
ggagttcacagcgacaatgacacatcgcagcgctcattatcgctatcgttgtcagtggga
aagaaatcagagcctaagggtgtgtgtaagccgaaggagccggagcgtagctctgagacc
gagtctgtgaacggaccaggccgggacagcgggctggcatcctctcgcctggagccttct
gccacgttaccgggccgggctggagcagagccagatgccatggaggggatgctcaatcga
aaacaggagatggagacccacagcaaaaaggcgcctagcaggtcctggcagaacgtgtac
tgtgtcctcagaaaaggaagtcttggtttctataaagatggcaagagcgctagcagtggc
atcccgtaccacggagaggtgcccatcagcctgggagaggctgtgtgtgaggtagcaaac
gactataagaagaggaaatttgtattcaagctcaggctcggggatggaaaggagtacctg
tttcaggcaaaggatgaggctgagatgagctcctggatccgttccatcatcggcgccatt
ccagcaggatcagcagactcgcctgtcggcccacgggccctcagccgtgccatgacgatg
ccgcccatctcccccaacgcaggcgaagccggaggcgttaccatgcgcaacaaagacggg
aaagagaaggaccgcgagaggaggttcagcttctttggcaagaaaaaataa
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