Pseudochrobactrum sp. XF203: LDL70_10020
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Entry
LDL70_10020 CDS
T10521
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psxf Pseudochrobactrum sp. XF203
Pathway
psxf03030
DNA replication
psxf03410
Base excision repair
psxf03420
Nucleotide excision repair
psxf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psxf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LDL70_10020 (ligA)
03410 Base excision repair
LDL70_10020 (ligA)
03420 Nucleotide excision repair
LDL70_10020 (ligA)
03430 Mismatch repair
LDL70_10020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psxf03032
]
LDL70_10020 (ligA)
03400 DNA repair and recombination proteins [BR:
psxf03400
]
LDL70_10020 (ligA)
Enzymes [BR:
psxf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LDL70_10020 (ligA)
DNA replication proteins [BR:
psxf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LDL70_10020 (ligA)
DNA repair and recombination proteins [BR:
psxf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LDL70_10020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LDL70_10020 (ligA)
MMR (mismatch excision repair)
DNA ligase
LDL70_10020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LDL70_10020 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
HHH
VCPO_N
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UCA44717
LinkDB
All DBs
Position
complement(2195551..2197704)
Genome browser
AA seq
717 aa
AA seq
DB search
MSEISVENLSEEQAAAELELLAKTIAEHDFLYNTQDAPTISDAEYDALRRRNQAIEQRFP
HLIREDSPSLKVGAAVSEKFSKITHNVPMLSLDNAFSDEDVSEFVGRIYRFLKLFPGSPL
GITAEPKIDGLSLSLRYEQGRLVSAATRGDGSVGENVTNNARTIADIPQVLKGDAPDVLE
VRGEVYMSHADFAALNEKQEKDGKPVFANPRNAAAGSLRQLDSKITASRVLRFFAYAWGE
VSEMPATTQMGMVEKFKSYGFTINPLMRRFESVPELVAHYHAIEEQRATLGYDIDGVVYK
IDDLALQQRLGFISRSPRWAIAHKFPAERAFTILKGIDIQVGRTGALTPVARLEPITVGG
VVVTNATLHNEDYIRGFDQKGNALREGRDIRVGDTVIIQRAGDVIPQIVDIVADKRPAES
VAYEFPRLCPVCGSHTVREEGEAVRRCTGGLICEAQAVERIRHFVSRNAFDIEGLGEKQV
EFFFNAEDESLKIRTPADIFTLEKRQAASPLKKLENIEGFGATSVKKLYAAINERREIAL
SRFLFGLGIRHVGEVNAKKLARAFGSYAKLAEVALAALVPQEKSDKGNDAWRELTDVEGI
GTIVAEAIVDFYQEPHNTEVLSALLAEVTPLDEVHEIVSGSPVAGKTIVFTGSLVRMSRD
EAKTMAERYGAKAAGSVSKKTDLVVAGPGAGSKLTKAAELGIEVIDEDAWFTLVGAD
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaatcagcgttgaaaatttgagcgaagaacaggccgcagctgagcttgaattg
ctggctaaaaccatcgctgagcatgattttctctataatacgcaggatgcgccgacaatc
tctgatgcggaatatgatgctctgcgtcgccgcaatcaggcaattgagcaacgttttccg
catttgatccgcgaagattcgccatcgctgaaagtcggcgcggcggtttcggagaaattc
tccaaaatcacccataatgtgccaatgctgtcgctggataatgctttcagcgatgaggat
gtgagtgaatttgtcggacgtatttatcgctttctcaaactctttccgggcagcccgctc
ggtataactgcagagccgaagattgatggcttgtcgctctcactgcgttatgagcagggg
cgtctggtgagtgctgcgacacgcggcgatggctctgtaggcgagaatgttaccaataat
gcgcgcacgattgccgatattccgcaggtgctgaaaggcgatgcgccggatgtgctggaa
gtgcgcggtgaagtctatatgagccatgccgattttgcggcgcttaatgaaaaacaggaa
aaagacggtaaaccggtttttgccaatccgcgcaatgcggcagctggatcgctgcgccag
ctggacagcaaaatcaccgccagccgtgtgttacgttttttcgcctatgcatggggtgag
gtgagcgaaatgcctgccactacgcaaatgggcatggtggaaaagttcaaatcctatggt
ttcaccatcaatccgctgatgcgccgttttgagagcgttccggaactggttgcccattat
catgcgattgaagagcagcgtgcaacgctgggttatgatattgacggtgtggtctataag
atcgacgatctggctttgcagcagcgtcttggttttatttcgcgcagcccgcgctgggca
attgcgcataaatttccggcagagcgtgcttttaccattctcaaaggcattgatattcag
gtcggccgtaccggtgcgctgacgcctgttgcgcgtctggagccgatcacggtcggaggc
gtggtcgtgaccaatgccacactgcataatgaagactatattcgcggctttgaccagaag
ggcaatgcgttgcgtgaggggcgtgatatccgcgtcggcgatacggtgattattcagcgt
gccggtgatgtgatcccgcagatcgtggatattgttgcagataaacgtcctgcggagagt
gttgcctatgaattcccgcgtctgtgccctgtctgtggcagccatacggtgcgcgaagaa
ggtgaggcggtgcgccgttgcaccggtggtctgatctgcgaggcgcaggcagtcgagcgt
atccgccatttcgtttcgcgtaatgcttttgacattgagggcttgggggaaaagcaggtt
gagttcttcttcaatgccgaagatgagagtttaaaaatccgcacgcctgctgatattttc
acgctggaaaagcggcaagctgcatcaccgctgaagaagctggagaatattgaaggtttc
ggtgcgacatcggtgaagaaactctatgccgcgattaatgagcggcgtgagattgccctg
agccgttttctgttcgggcttggtatccgccatgtcggtgaggtcaatgccaagaaactg
gcacgcgcctttggttcttatgccaagctggcagaagtggcgttggccgctctggtgccg
caggaaaagagcgacaagggcaatgatgcatggcgcgaactgactgatgtggaaggtatt
ggcacgatcgtcgctgaggcgattgtggatttctatcaggagccacataatacagaagtg
cttagcgcattgctggcagaggtaacaccgctggatgaagttcacgaaatcgtgagcggc
tctccggttgccggtaaaaccatcgttttcaccggatcgctggtgcgcatgtcgcgtgat
gaagccaagaccatggcggagcgctatggcgcaaaagcagcgggttcggtttcaaaaaag
acagatctggtggttgcagggccgggggcaggctcaaaactcaccaaagctgcggagctg
ggcattgaggtgatcgacgaagatgcgtggtttacgctcgttggtgcggattaa
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