Psychrobacillus sp. INOP01: KD050_06845
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Entry
KD050_06845 CDS
T09653
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psyb
Psychrobacillus sp. INOP01
Pathway
psyb03030
DNA replication
psyb03410
Base excision repair
psyb03420
Nucleotide excision repair
psyb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KD050_06845 (ligA)
03410 Base excision repair
KD050_06845 (ligA)
03420 Nucleotide excision repair
KD050_06845 (ligA)
03430 Mismatch repair
KD050_06845 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyb03032
]
KD050_06845 (ligA)
03400 DNA repair and recombination proteins [BR:
psyb03400
]
KD050_06845 (ligA)
Enzymes [BR:
psyb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KD050_06845 (ligA)
DNA replication proteins [BR:
psyb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KD050_06845 (ligA)
DNA repair and recombination proteins [BR:
psyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KD050_06845 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KD050_06845 (ligA)
MMR (mismatch excision repair)
DNA ligase
KD050_06845 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KD050_06845 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QUG42953
LinkDB
All DBs
Position
complement(1344782..1346785)
Genome browser
AA seq
667 aa
AA seq
DB search
MDQLEQRVQELHKLLNDYGHAYYVLDDPIVPDAVYDQYLHELIALEEQNPDLILPDSPTQ
RVGSIVSEGFKKVTHANPMLSLSNAFNEADLRDFDKRIQGIIDESPTYVCELKIDGLAIS
LLYVDGLLVRGATRGDGTTGEDITSNIKTIRSIPMRLKEKVTMEARGEAYMPKSSFAKLN
EERTAQAEVLFANPRNAAAGSLRQLDPKITASRNLSMFVYGMGGDGEDQNIDNHLDALGF
MKKQGLPTNKETKKCTSIEEVLSFIEEWTEKRHDIPYEIDGIVIKVNDYAQQEELGFTAK
SPRFAIAYKFPAEEVVTKIIDIDLTVGRTGVVTPTAILEPAQVAGSTVQRATLHNEDLIR
EKDIRIGDRVIIRKAGDIIPEVVAVITAERKGTEVPYEMPTNCPVCESELVRIEEEVALR
CVNPQCPAQIQEGIYHFASRNAMNIDGLGEKVVEQLFREQLIKDISDLYTLTVDDLVKLE
RMGLKSATNLVEAIEASKANSMERVLFGLGIRHIGEKAAKILSENFHNFEALMKATKDEL
IAIFEIGDKMADSLVTYFEQDEVQLLIGRLKDAGLTLQYTGRIIDAAVMENSPFAGKTVV
LTGKLIQLTRTEAKEKIESLGGKVAGSVSKKTDLVIAGEEAGSKLEKATSLGIEVWDEQK
LLDSVTE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggatcagttagaacaacgagtacaagaactacacaagctgttaaatgattatggtcat
gcctattatgtattagatgatcctattgttccagatgccgtttacgatcaatatttgcat
gagctaatagccttggaggaacaaaatccagatttaatattaccggattctcctactcag
cgagttggttccatcgtaagtgaaggctttaaaaaagtaacccatgcaaacccaatgctt
agtctatcgaatgcttttaacgaagcggatctgcgtgatttcgacaaacgtattcaaggt
attatcgatgaatcaccaacgtatgtatgtgaattgaagattgatggacttgcaatttcc
ctattatatgtggatggtcttttagtaagaggggctacccgtggggatggtacgactggt
gaggatattacaagtaatattaaaaccattcgttccattcctatgcgcttaaaggaaaag
gtaactatggaggcaagaggagaggcatatatgccaaagtcttccttcgcaaagttgaat
gaagaacgcacagcacaagcagaggtattatttgcaaatcctcgtaatgcagcagcaggc
tctttacgtcagctcgaccctaaaataacggctagccgtaatttatcaatgttcgtctat
ggtatgggtggcgacggtgaggaccagaatatagacaatcatttagatgcactaggattt
atgaaaaaacagggattacctactaataaggaaacaaaaaaatgtacatccatcgaagaa
gtacttagctttatagaagagtggacggaaaaaagacatgacattccatatgaaattgat
ggaattgttataaaagtaaatgactatgcacagcaagaagagctaggatttactgcgaaa
agtccacgatttgctatagcttataaatttccagcagaggaagtagtcacgaaaattatc
gatatcgacttaacagttggtcgcacgggtgttgttactccaactgctattttagagcca
gcacaagtggcgggatctactgtccaacgtgctacacttcataacgaagatttaatccgt
gaaaaggatattcgaatcggtgatcgtgtcattatccgaaaagcaggagatataattcct
gaagtagtagccgttataactgcagagagaaaaggcacggaagtaccatacgaaatgcct
accaattgtccggtttgtgaaagtgaattagttagaattgaagaagaagtcgcacttcgt
tgtgtaaatccacaatgtcctgcccaaattcaagaaggtatttaccactttgcttctcgc
aatgcgatgaatattgatggacttggagaaaaagtggtggaacagttatttagagaacaa
ctcatcaaagatatttcagatttatatacattaacagtggatgatttagtaaagctggag
cgtatgggactaaaatctgcaactaatttagtggaagcaatagaagcatcaaaagcaaat
tcaatggagcgagtattattcggacttggaattcgtcatattggagaaaaagctgcaaaa
atactttcggagaattttcataactttgaagcattaatgaaagcaacaaaagatgagctt
atagctatttttgaaattggtgataaaatggcagattcattagtgacctattttgaacag
gatgaggtccagttattgattggtcgattaaaagatgcaggattgacgctacagtatact
ggtagaattattgatgcagctgtaatggaaaacagcccatttgcgggtaaaacagttgta
ttaacagggaagcttatccaactaactcggacagaagcaaaagaaaaaatagagtcatta
ggtggcaaagttgccggaagtgtcagtaagaaaacggatttagtcattgctggagaagaa
gcaggatctaaactagaaaaagcaacaagccttggtatcgaggtttgggatgaacaaaaa
ttattagactccgtaacggagtaa
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