Pseudomonas syringae pv. tagetis: MME58_09275
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Entry
MME58_09275 CDS
T08245
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psyi
Pseudomonas syringae pv. tagetis
Pathway
psyi03030
DNA replication
psyi03410
Base excision repair
psyi03420
Nucleotide excision repair
psyi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psyi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MME58_09275 (ligA)
03410 Base excision repair
MME58_09275 (ligA)
03420 Nucleotide excision repair
MME58_09275 (ligA)
03430 Mismatch repair
MME58_09275 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyi03032
]
MME58_09275 (ligA)
03400 DNA repair and recombination proteins [BR:
psyi03400
]
MME58_09275 (ligA)
Enzymes [BR:
psyi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MME58_09275 (ligA)
DNA replication proteins [BR:
psyi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MME58_09275 (ligA)
DNA repair and recombination proteins [BR:
psyi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MME58_09275 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MME58_09275 (ligA)
MMR (mismatch excision repair)
DNA ligase
MME58_09275 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MME58_09275 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UNB70390
LinkDB
All DBs
Position
2052316..2054679
Genome browser
AA seq
787 aa
AA seq
DB search
MKAVETRILELRAELDEHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQ
RVGSAALSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGLDLPAGDLLGEGSKVQYSC
EPKLDGLAVSLLYRDGALVRGATRGDGATGEDISVNVRTVRNIPLKLKGKGWPDVLEVRG
EVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQTSA
EIADTHIGVLETLKKWGMPVSRELKLADGVDECLAYYHDIGERRLTLSYEIDGVVFKVNN
LAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVTERRPESARPVQVPQTCPVCGS
HVERTQLIKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGDKTIEQ
LVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVG
EETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECG
LQLQDQGELGAEFAASTTLQGLIDKLHIPSVGPGAAQKLADRFGTLEAVISADWLDMRQA
LPEKQAKSVRDFFDDSTHAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLE
RMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLAKANELGLTVLDEDALFKRLA
ELGVAVD
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccgttgaaacccgaatcctggaactgcgtgcagaactggatgagcataactat
cgctaccacgttctggatgagccaagcattccggatgtcgagtacgaccgcctgtttcac
gaactcaaggcccttgaggcagaaaacccgcacctggtgacccccgattcaccgacacag
cgggtcggtagtgccgccttgtcggcgtttacgcaggtgcgtcacgaaatgccgatgctc
agcctgggcaacgctttcgaagaaaacgacatgctcgagtttgaccgccgggtaaccgag
ggcctggacctgccggccggggacctgttgggtgaaggcagcaaggtgcagtacagctgc
gagcccaagctcgatggtctggccgtcagtctgttgtatcgcgacggtgcgctggtgcgc
ggtgcgacacgcggggacggggctacgggcgaagacatcagtgtcaatgtgcgcaccgtg
cgcaatatcccgctcaagctgaagggcaagggctggccggatgtgctggaagtgcgtggc
gaagtgttcatgtccaaggcgggtttcgaacgcctcaacgccagccagctggaaatcggc
ggcaaaaccttcgccaacccgcgcaatgcggcagcgggcagcctgcgccagctggattcg
aaaatcaccgccaatcgtccgctggagttctgctgttacggcctgggccagacgtcggca
gaaatcgccgatactcacatcggcgtacttgaaacactgaaaaaatggggaatgccggtc
agtcgcgagttgaaactggctgatggcgtcgacgagtgtctggcctattaccatgacatc
ggcgagcggcgcctgacactgagctacgagatcgacggcgtggtgttcaaggtcaataac
ctggctgcgcaacgcgaactgggcttccgcgcccgtgagccgcgctgggcgatcgcccac
aaattcccggccatggaagagctgaccgagctgctggatgtcgaattccaggtcggccgt
accggcgctgtgacaccggtcgcgcgtctcaagccggtcaaggtggcgggcgtcatggtc
gccaacgctacgctgcacaacatggatgaagtggcgcggctcggccttatgatcggcgat
acggtgattatccgccgcgccggtgacgtgattccgcaggtggtgcaggttgtcaccgag
cgccgtcccgagagcgccaggccggtccaggtcccacagacctgtccggtctgcggctcg
catgtcgagcgcacgcagttgatcaaacgcagcaagggcaaggaaaccgtatccgaaggg
gcggtgtaccgctgcgtcgggcgtctggcctgtggcgcgcaactcaagcaggcgatcatc
cattatgtgtcgcgtcgcgccatggacatcgacgggctgggtgacaagaccatcgagcaa
ttggtcgatgaaaaactcatcggttcgcccgccgatctgtacaaactgaaatacgagcag
atcatcgacctggaaggctttgccgaaatctccagcaacaagctgctcaaggcgatagcc
gatagccgccagccgaccctggcgcgcttcatctatgccttgggtattcctgatgtggga
gaagaaacggccaaggtgctggcgcgttcgctggcctcgctggaccgagtcaaacaggcg
ctgccggaggtgttgacatacctgccggatgtgggcctggaagtcgcttacgagattcac
agcttttttgaagacgagcacaaccgtaacgtcatcgatgcgctgctgggcgaatgtggt
ctgcaattgcaggatcagggtgagctgggggctgagtttgctgccagcaccaccctgcaa
gggctgatcgacaaattgcacattccgtcggtagggccgggcgctgcgcagaaactggcg
gacaggtttggcacgctggaggccgtcatcagcgccgactggctggacatgcgccaggcg
ctgccggagaaacaggcaaagtcggtacgtgatttcttcgacgacagcacgcacgccgag
cgcgcccgcgctatcgaagcacagctcaaggacttcggcatgcactggcgcagtgagaaa
aaaaccgtcgaaggcttgccactggccgggcagacctgggtgctgaccggttcgctggag
cgcatgagtcgtgatgtcgccaaggaaaaactcgaaagcctgggtgccaaggtgtcgggc
tcggtatcggccaagacccacaccgtggttgcagggccgggtgccggctcgaaactggcc
aaggccaacgagctgggcctgaccgtgctggacgaagatgcgctgttcaaacgcctggcc
gagctgggcgtggcggttgattga
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