Pseudomonas syringae pv. tagetis: MME58_24490
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Entry
MME58_24490 CDS
T08245
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psyi
Pseudomonas syringae pv. tagetis
Pathway
psyi03030
DNA replication
psyi03410
Base excision repair
psyi03420
Nucleotide excision repair
psyi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psyi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MME58_24490 (ligB)
03410 Base excision repair
MME58_24490 (ligB)
03420 Nucleotide excision repair
MME58_24490 (ligB)
03430 Mismatch repair
MME58_24490 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyi03032
]
MME58_24490 (ligB)
03400 DNA repair and recombination proteins [BR:
psyi03400
]
MME58_24490 (ligB)
Enzymes [BR:
psyi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MME58_24490 (ligB)
DNA replication proteins [BR:
psyi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MME58_24490 (ligB)
DNA repair and recombination proteins [BR:
psyi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MME58_24490 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MME58_24490 (ligB)
MMR (mismatch excision repair)
DNA ligase
MME58_24490 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MME58_24490 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
RNA_ligase
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UNB68298
LinkDB
All DBs
Position
5464191..5465876
Genome browser
AA seq
561 aa
AA seq
DB search
MPFALRLMTCAFLILLTPLGHASQCPDWSPARADIEIAALQQQIAEWDDSYHRRGISQIP
DALYDQSRLKLDAWRSCFAVAAIDDHPLKTASGPLAHPVPHTGVSKLADDKSVMGWLKGR
SDVWVQPKVDGVAVTLVYDKGRLIQAISRGDGLKGQDWTSQARLIKAIPKHLPRQDAVIL
QGELYWRLADHVQAAAGSVNARSKVAGLLARQTISPQQADAIGLFVWDWPSGPADMPQRL
AGLQAMGFEDSEAYTHPLENHAQAAQWREHWYRNPLPFATDGVIIRQGQRPPMQRWQATA
PYWIAAWKHPYAQALAEVRKVSFNIGRSGRITPVLELTPVRLDDRIVSRIGTGSLQRWQK
LDIRPGDQVAVSLAGLTIPRLDGVISRAAERAEMIIPNAEDFHALSCWQATPGCESQFRA
RLVWLSGKKGLALPGVGPGTWDKLIESGRIEGLLDWMNLNHAELANIPGFAERSSAKLLT
SLQSAREKPFQTWLKAIGLPPTGGAKLPDNWHELAGRSVEQWQAEPGVGPGRATKLKSFF
QDPQVQALSQQLQAQGISGFK
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgccgtttgccttacgcctgatgacctgcgcctttctgatactcctcacccctctcggc
catgccagccagtgccccgactggtctcccgccagggcagacatcgagatcgcggccctg
cagcagcagatcgcagaatgggacgacagttaccatcgccgtggcatttcgcagatcccg
gacgcgctttacgatcagtcacgactgaagctggacgcctggcgatcgtgctttgccgtt
gcggcgattgacgatcaccctttgaaaaccgcgtctggcccgctggcgcatcctgttccg
cacacgggcgtcagcaagctggcagatgataaaagtgtcatgggatggctcaagggccga
agcgacgtgtgggttcaacccaaggtcgatggggtagccgttacgctggtctacgacaag
ggcagactgatccaggcgatcagccggggggatgggctcaaaggccaggactggacctcg
caggcgcgactcataaaggccattcccaagcacttgccccggcaggacgctgtgattctg
caaggcgaactctattggcggctggccgatcatgtgcaggcagcagcaggcagcgtcaat
gcgcgcagcaaggtcgcagggctattggcgcggcagacgatcagcccacaacaggccgat
gccatcggcctgttcgtctgggactggccgagcgggcctgccgacatgccgcaacgactc
gcaggcctgcaagccatgggttttgaggacagcgaagcttacacgcacccattggaaaat
catgcccaggccgcgcaatggcgcgagcactggtatcgcaacccactgccattcgctacc
gatggcgtgatcatccgtcagggccagcgaccacccatgcagcgctggcaagccactgcg
ccttactggatcgcggcctggaagcatccttacgcccaggcgctggccgaggtgcgcaag
gtcagcttcaatatcggtcgcagtggccggattacgccggtcctggaactgacgccagtg
cgcctcgacgaccgtatcgtcagtcgcatcggcaccggttcgctgcagcgctggcaaaaa
ctggatatcaggcccggcgatcaggtcgccgtgagtctggccgggctgacgattccaaga
cttgacggagtgatatcgcgggccgccgaacgcgctgaaatgatcatcccgaacgccgaa
gactttcatgcgttgagctgctggcaagccacgccgggctgtgaaagccagttccgcgcc
agactggtctggctcagcggcaaaaagggtcttgcgttgcccggcgtcggtccggggacc
tgggacaagctcattgaaagcggccgaatagaaggtctgctcgattggatgaacctgaat
catgctgagcttgctaacattcccggcttcgccgagcgcagcagcgctaaactgctcacc
agcctgcaaagtgcccgtgaaaagccttttcagacatggctcaaggccatcggactgccg
cccacaggaggcgcgaaactgcctgacaactggcacgaactggccgggcgtagcgtcgaa
caatggcaggcagaaccgggcgtagggcctggtcgggcaacgaagctgaaatcttttttt
caggacccacaagtacaggcattgagccagcaattgcaggcccagggtatttcaggtttt
aagtag
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