Psychrobacter sp. KFRI-CH2-11: AADH33_07500
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Entry
AADH33_07500 CDS
T11272
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psyk Psychrobacter sp. KFRI-CH2-11
Pathway
psyk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AADH33_07500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyk03019
]
AADH33_07500
Enzymes [BR:
psyk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AADH33_07500
Messenger RNA biogenesis [BR:
psyk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AADH33_07500
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_30
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WZH78894
LinkDB
All DBs
Position
complement(1819150..1820304)
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AA seq
384 aa
AA seq
DB search
MSNFKKFTDLPLSNPTLRAVSDLGFTELTPIQAKILPHTLANQDAIGQAQTGTGKTATFL
LTIMEALLKRPFTSDEERYLGEPRAVVMAPTRELAQQIFDDCIALTKYTSLHSVCIMGGT
NYETQQHELERQYVDILVATPGRLIDLANKGMVFLDRVEVLVLDEADRMLDMGFIPDIKR
LVGRMPANTDRQSLLFSATFNQDVMNLAYRWLHEPQFVEIEPEHKTSELVDQHFYLLTED
QKLTALQRIISDSDVEKVIVFANRKDQVKRLYHKLRQSHKVVMLSGDVIQQKREKYLQRF
KDGHAAILVATDVAGRGIHVDDISHVVNYTLPDQPDDYVHRIGRTGRAGQTGISISFVSE
DDAFNIPALEKHLDTKFALEQWQE
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaattttaagaaatttacggatttaccgttatcaaatccgaccctacgtgccgtc
agtgatttgggttttaccgagctgacacccattcaagcaaagatattgccgcatactttg
gccaatcaagacgcgatcggccaagcccaaacagggacagggaagacagccacgttttta
ttgaccattatggaggcgctgttaaagcggccttttactagtgacgaagagcgttatttg
ggagagccgcgtgcggtagtgatggcaccgacgcgcgagcttgctcagcagatatttgat
gactgtattgccttgaccaaatatacttcactgcatagcgtctgtatcatgggcggcacc
aattacgaaacccagcagcatgagcttgagcgtcagtacgtggatattttggtagcgacg
ccagggcgtctgattgatcttgccaataaaggcatggtgtttttggatcgcgttgaggta
ttggtgctcgatgaagcagaccgtatgctggatatgggatttatccccgacatcaagcgg
ttggtcgggcgcatgcctgccaatactgatcgtcagagtcttcttttttccgcgaccttc
aaccaagatgtgatgaacttagcgtatcgctggctgcatgagccgcagtttgttgagatc
gagcctgagcacaaaaccagtgagctggtcgatcagcacttttatctattgacagaagat
caaaagctgacggccttgcagcgcattattagtgatagcgatgtcgaaaaagttatcgta
tttgccaatcgcaaagaccaagtcaaacgcctctatcataagctgcgccaatctcataaa
gtcgttatgctatcgggcgatgtgattcagcaaaaacgcgagaagtatttgcagcgtttt
aaagacggtcatgctgctattttggtcgccacagacgtcgcaggtcgcgggattcatgtc
gatgatatcagccacgtggtcaactataccttgcctgatcaaccagatgattatgtacac
cgtattggccgtactggccgtgctgggcagacaggcattagtattagctttgtcagcgaa
gatgatgcgttcaatatcccagcattagaaaagcatctggatacaaaatttgcgttagag
cagtggcaggagtag
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