Psychrobacter sp. KFRI-CH2-11: AADH33_08985
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Entry
AADH33_08985 CDS
T11272
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
psyk Psychrobacter sp. KFRI-CH2-11
Pathway
psyk03410
Base excision repair
psyk03430
Mismatch repair
psyk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psyk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AADH33_08985 (recJ)
03430 Mismatch repair
AADH33_08985 (recJ)
03440 Homologous recombination
AADH33_08985 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psyk03400
]
AADH33_08985 (recJ)
DNA repair and recombination proteins [BR:
psyk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AADH33_08985 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AADH33_08985 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AADH33_08985 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WZH79174
LinkDB
All DBs
Position
complement(2186214..2187965)
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AA seq
583 aa
AA seq
DB search
MLNLTPRYTSTRIDELPAALQPLAAQSPTLARLYAGRGITNPEQLEISLSGLLPAEQLHG
VTKAVDLLDAAIDKGQRILIVGDFDCDGATSTALMMRVLTKMGAVVDFLVPDRFKYGYGL
TPEIVELGIETYQPDMIVTVDNGISSHEGVARAQADGITVIITDHHLTTKETPPAEAVVN
PNQLDCHFASKALVGVGVAFYVLGRLAKQRRTAGKSTVQVSQYLDLVALGTIADVGVLDK
NNRILVHHGLTAIRQGRCCMGILALLEQAGRDPKQLHAQDFGFVLGPRINAAGRMDNMRI
GIECLLTEDWHTAQRLAQELEQLNRTRRQVEGEMRAQADNIVQTLAGTASSTDKRSIILY
QDDWHQGVIGIVAGRLKETHYLPSIVFAPADKACTGDDDAIKGSARSIAGVHIRDAIELV
AERYPDLISHFGGHAMAAGLTIKRRHFDGFVAAFNEVMAEIDDEVFAEQKLTDGPLQASD
FSLWFAEHLADASIWGHGFAPPIFDGVFEVLSFKVLKDKHLKLSLRYPDVQYPIDAIYFN
FDSAAWDYRAQQVHVLFELDINEWNGKQSLQLMIKDLAVVAAA
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgctaaatttaaccccccgttataccagcactcgcatcgacgagttgcccgccgctttg
cagcctcttgccgcccagtcaccgacgcttgcccgactatacgctggtcgcggcatcacc
aatcctgagcagctggagattagtctctctgggctactgcccgctgagcagctgcatggt
gtcaccaaagctgtggatctgttagatgctgctattgataaaggtcagcggattctgatc
gtcggcgactttgactgcgacggcgcgaccagcacggcgctgatgatgcgtgtgctcact
aagatgggcgcggtggtggactttttggtgccagatcgctttaagtatggctatgggctg
acgcctgagattgtggagctggggattgagacttatcagccagatatgatcgtgacggtg
gacaatggcatctccagtcatgaaggtgtcgcccgtgcgcaggccgatggcattacggtg
attatcaccgaccatcacttgaccaccaaagagaccccgccagctgaagcggtggtcaac
cccaatcagctcgactgtcattttgccagcaaagccttggtgggggttggcgtggcgttt
tatgtgctgggccgcttggcaaaacaacgccgtacagctggtaagtccactgtacaagtc
agccagtatttagatttggtggcgctcggcacgattgctgatgttggcgtactggacaaa
aacaaccgtatcttggtgcatcacgggctaactgccattcgtcaagggcgctgctgcatg
ggtatcttggcgctccttgagcaagcaggccgcgatccaaagcagctgcacgcccaagac
tttggttttgtcttaggcccacgtatcaacgctgctgggcgcatggacaacatgcgtatc
ggcattgagtgtttgttgaccgaagactggcacaccgcgcagcgtttggcgcaagagcta
gaacagctaaaccgtacgcgccgtcaggtagaaggcgagatgcgggcgcaggcggacaat
atcgtacaaacgctagcaggcaccgccagtagcaccgataagcgcagtattattttgtat
caagatgattggcaccaaggcgtcatcggtatcgtcgctggacgattaaaagaaacgcat
tatctgcccagcattgtctttgcgccagcagataaagcgtgtaccggagacgatgatgcg
atcaaaggctctgcgcggtcgattgcaggcgtgcatattcgtgatgccattgagctggtc
gctgagcgctatcctgacttgatcagtcactttggtggccatgcgatggcggcaggcttg
acgatcaagcgtcgtcactttgacgggtttgtggcggcattcaatgaggtcatggcagag
atagatgatgaggtgtttgctgagcaaaagctcaccgatgggccactgcaggccagcgac
tttagcctatggtttgccgagcatttggcagatgccagtatctggggtcatggctttgca
ccgccgatatttgatggggtgtttgaggtattaagcttcaaggttttaaaagacaagcac
ttgaagctatcactgcgttatcctgacgtgcagtatccgattgatgccatttattttaac
tttgatagcgcggcgtgggattatcgcgcccagcaagtgcatgtattgtttgagctggac
atcaacgagtggaacggcaaacaaagcttacaactcatgatcaaagacttggcagtggta
gcagcggcgtag
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