Psychroserpens sp. NJDZ02: E9099_19005
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Entry
E9099_19005 CDS
T05945
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psyn
Psychroserpens sp. NJDZ02
Pathway
psyn03030
DNA replication
psyn03410
Base excision repair
psyn03420
Nucleotide excision repair
psyn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E9099_19005 (ligA)
03410 Base excision repair
E9099_19005 (ligA)
03420 Nucleotide excision repair
E9099_19005 (ligA)
03430 Mismatch repair
E9099_19005 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyn03032
]
E9099_19005 (ligA)
03400 DNA repair and recombination proteins [BR:
psyn03400
]
E9099_19005 (ligA)
Enzymes [BR:
psyn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E9099_19005 (ligA)
DNA replication proteins [BR:
psyn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E9099_19005 (ligA)
DNA repair and recombination proteins [BR:
psyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E9099_19005 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E9099_19005 (ligA)
MMR (mismatch excision repair)
DNA ligase
E9099_19005 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E9099_19005 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
ZP1_ZP4_Ig-like
Zn_ribbon_Top1
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QCE43422
UniProt:
A0A4P7X2Q3
LinkDB
All DBs
Position
complement(4293966..4295960)
Genome browser
AA seq
664 aa
AA seq
DB search
MSIKLELKALREELRGHNYNYYVLDNPTISDYDFDIKLKALQVLEAAHPEFYDANSPTLR
VGGAVTKNFNTVVHKHRMYSLDNSYSLEDLKDWETRIRKMVDGHVEYVCELKYDGASINL
TYQNGSLLKAVTRGDGTQGDEVTPNIKTINSVPLQLKGDFAEDFEIRGEIILPYEGFIKM
NEERIENGEEPYKNPRNTASGSLKLQDSAEVAKRPLDCLLYGLVGGDFEYKTHFESLEKA
RQMGFKVPKEAQLCQSIEEVFEFIKQWDHARHDLPYETDGVVVKVNNLHQQDELGFTSKA
PRWAMAYKFKAEQVSTVLNSISYQVGRTGAITPVANLEPVELAGTIVKRASLHNADQIEK
LDIRVGDTVYVEKGGEIIPKIIAVNLDERPADSQPTQYITNCPECGTDLQREAGEAKHFC
SNYNGCDPQVIGRIQHYISRKAMDIEGLGGETVALLVKAGLIHNYADLYALTKDQVLPLE
RMAEKSADNLIAGVKASKQIPFERVLFALGIRFVGETVAKKLAKHFKSIDALAFASILDL
EQVDEIGIRIAESVVDFFSDSKNQDIVNRLKAYGLQLEISAEKLAGQTDKLKGQSIVVSG
VFHTVSRTELKKLIEDNGGKVSSSISSKTSYIVAGDNMGPSKKDKADLLKIKLITEEDFL
QSLK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgagcataaaattagagttaaaggcattaagagaagagttaagaggacataattataat
tattatgttttagataatccgacgattagcgattacgattttgatataaaattaaaagca
ttacaggtattagaagctgcgcatcctgagttttacgatgctaactcgccaacattacgt
gttggaggagcggtgactaaaaattttaatactgttgtgcataagcataggatgtatagc
ttagataactcttactcgctggaagatttaaaagattgggaaaccagaataagaaaaatg
gtggatggtcatgtggagtatgtttgcgaacttaaatatgatggtgcgtctataaatcta
acctatcaaaacggaagtttattaaaagcagtgacgcgtggtgacggtacgcaaggggat
gaggtcacgcctaatattaaaacaatcaattctgtgcctttgcagttaaaaggcgatttt
gctgaagactttgagattagaggtgaaattattttaccatacgaaggatttattaagatg
aatgaagagcgcatcgaaaatggagaggagccttataaaaacccgcgtaatacagcttca
ggaagtttaaaattacaggatagtgctgaggttgcaaaacgacctttagattgtttgctt
tatggtttagttggtggcgattttgaatataagacacattttgaaagcttagaaaaggca
cgtcaaatgggttttaaagtgccgaaagaagcacagttgtgccaaagtattgaggaggtt
tttgagtttataaagcaatgggatcatgccagacatgatttaccttacgagacggatggt
gtagtagtaaaagttaataatttacaccaacaagatgagcttggttttacgtccaaagca
ccacgttgggctatggcttataagtttaaagcggagcaggttagtacggttttaaatagt
atttcctatcaagtcgggcgtacaggggcaattactccagttgctaatttagaacctgtt
gagttagcggggactattgtaaaacgagcctctttacataatgcagatcaaattgaaaaa
ctagacattagagtaggagatacggtgtatgtggaaaagggaggtgaaattatacctaaa
attatcgctgtaaatttagacgaacgtccagcagattctcaaccaacacaatacattact
aattgtcctgaatgtggtaccgatttacaacgagaagcaggggaagcgaaacatttttgt
tcaaattataatggttgtgatcctcaggtaattggtcgtatccaacattatatttcgcgt
aaagcaatggatattgaaggtttaggaggagagaccgtagcgcttttagtaaaggcagga
ttaatccataattatgcagatttatacgcattgaccaaagatcaagttttgccgttagag
cgtatggcagagaaaagtgctgataatttaatagcaggtgttaaagcttctaagcaaata
ccctttgaacgtgtcttatttgctttggggattcgttttgtgggagaaacggttgctaaa
aaattagctaaacattttaagagtattgatgctttagcatttgcttctattttagattta
gaacaagttgacgaaattggtattagaatagcagaaagcgttgttgacttcttttcggat
agtaaaaaccaggacattgtaaatcgattaaaagcttacggcttgcaattagagatttcg
gcagaaaaattagctggtcaaaccgataagctaaaaggacagagtattgttgtttctggg
gtgtttcatacggtatccagaactgagcttaaaaaactgatagaagataacggcggaaaa
gtcagtagttctatctcatctaaaacgagttatattgttgcaggagataatatgggacca
agcaaaaaagataaggctgatttgttgaaaataaaactcattacagaagaagatttccta
caaagtctcaagtaa
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