Psychrobacter sp. PAMC27889: E5677_11445
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Entry
E5677_11445 CDS
T06076
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psyp
Psychrobacter sp. PAMC27889
Pathway
psyp03030
DNA replication
psyp03410
Base excision repair
psyp03420
Nucleotide excision repair
psyp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E5677_11445 (ligA)
03410 Base excision repair
E5677_11445 (ligA)
03420 Nucleotide excision repair
E5677_11445 (ligA)
03430 Mismatch repair
E5677_11445 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyp03032
]
E5677_11445 (ligA)
03400 DNA repair and recombination proteins [BR:
psyp03400
]
E5677_11445 (ligA)
Enzymes [BR:
psyp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E5677_11445 (ligA)
DNA replication proteins [BR:
psyp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E5677_11445 (ligA)
DNA repair and recombination proteins [BR:
psyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E5677_11445 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E5677_11445 (ligA)
MMR (mismatch excision repair)
DNA ligase
E5677_11445 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E5677_11445 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
RNA_pol_A_CTD
PSF3_N
Motif
Other DBs
NCBI-ProteinID:
QCB31552
LinkDB
All DBs
Position
complement(2757090..2759213)
Genome browser
AA seq
707 aa
AA seq
DB search
MTDSTLPNNSKNLSAQVERKAPATSDIASSTDGSVVNSTEIVSRMRTLIETIMTNNYAYY
VLDNPTLEDSEYDQVRRTLLELEEEYPDLVQPDSPINQVGDVPLSAFTQVTHDIPMLSLG
NVFEYDDLRDFMRRVNDRLSVSQQNPEYEMELKLDGLAVSLKYEHGKFVQAVTRGDGQTG
EDITQNAKTIRNLPLWLADAADIELLEVRGEVLMPKAGFERLNRLAEESEGKTFANPRNA
AAGSLRQLDSSVAASRPLAFYVYSVNQGLPENIETQSDALAWLKTLGFSVSAVEVIKNPR
EAQAYYESVIEGRSDLPFEIDGMVIKVNSLALQQQLGFLSREPRWATAYKFPAETVMTRL
HAIEWQVGRTGQITPVGKLEPVKVGGVTVSNVTLHNFGEIQRLDVRAGDMVSVHRAGDVI
PKVTRVWIDQRPENSEPVTLPSTCPVCDSPVVLPEDEALARCTGGLFCPAQQTEALIHFV
SRRAMDIDGLGASWLISFFEHGLVKTVADIYELHEHQDEMVTFEKLGEKSVQNIINAIEA
SKHTTLARFIYALGIRGVGEGTAQNFAQQFGDLDSLMAADIETLVKTPDVGEITAELTYK
FFRAPHNIEVITALREAGVHWDKVEQKATTGLPFDGQTWVITGALSSMARDEAKAKLQAL
GAKVSGSISAKTTALLAGEKAGSKMAKAEKLGVKVVGEDEFLAMVAE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgaccgactctaccttaccaaataattctaaaaacctatctgctcaagtggaaagaaaa
gcacctgcaacatctgatatagccagttcgaccgatggcagtgtggttaatagcacagaa
attgtctcgcggatgcgcacgctgatcgagactattatgacgaataattacgcgtattac
gtgctcgacaatcctaccttagaagacagcgaatacgatcaagtgcgccgcacgttgctc
gaattagaagaagagtatccagatttggtgcaacctgacagtccgatcaatcaagttggc
gatgtacctttatccgcctttactcaagtgacgcatgatattccgatgctatcgctgggc
aacgtctttgaatacgatgatttgcgcgatttcatgcgccgcgtcaacgaccgtcttagc
gtctcacagcaaaaccctgagtatgagatggagctaaagctagatggtctggcagtctca
ttgaaatatgaacacggcaagtttgtccaagcggtcacgcgcggtgatgggcaaacgggt
gaagacatcacccaaaatgccaagaccattcgcaatctgccgctttggttggctgatgct
gccgacattgaattgttagaagtacgcggtgaagtgctgatgccaaaggcaggctttgag
cgtctcaatcgacttgccgaagagagcgaaggcaaaacctttgccaatccacgcaatgcg
gccgctggaagcttacgtcagctagactcaagcgtagcagccagtcgtccattggcgttt
tatgtgtattcggtcaatcaaggcttgcctgaaaatatcgagacccaatcagacgcgctt
gcatggctaaaaacccttggctttagcgtcagtgcggtggaggtaataaaaaatccaaga
gaagcgcaagcctattatgagtcggtgatagaagggcgtagtgatttgccgtttgagatc
gatggcatggtgatcaaggttaacagccttgcattacagcagcaacttgggtttttatcg
cgtgagccgcgctgggcaacggcttataaattccctgccgaaacggtgatgacacgcttg
catgccatcgaatggcaagttggacggacaggacaaatcacccccgtcggtaagctcgag
cctgtcaaagtcggcggcgtcaccgtcagcaatgtcaccttgcataattttggtgagatt
cagcgccttgacgtacgcgcaggcgatatggtcagcgtccaccgtgcaggcgacgtcatc
cccaaagtcacccgcgtttggatcgatcagcgcccagaaaactccgaacctgtcactttg
ccatcgacttgtccggtctgcgactcgcctgtcgtcttgcctgaagacgaagcgctggca
cgttgtaccggcggtctgttttgtcccgcgcagcagaccgaggcgctgattcactttgtc
tcgcggcgagcgatggatatcgatggcttgggcgcaagctggctcattagcttttttgag
catggcttggtcaagacggtcgctgatatttatgagctccatgagcatcaggatgagatg
gtcacctttgaaaaactgggtgaaaaatcggttcaaaacatcatcaatgccatcgaagcc
agcaagcatacgacactggctcgctttatctatgcgcttggcattcgcggcgttggtgaa
ggcaccgcacagaactttgctcagcaatttggggacttagatagcctgatggccgccgat
attgaaactttagtaaaaacccccgatgtgggcgaaatcaccgctgagctgacgtataaa
ttcttccgcgcgccgcacaatatcgaagtcatcaccgccttacgagaagcaggtgtgcat
tgggataaggtcgagcaaaaggcgacgacgggtttgccattcgatgggcaaacgtgggtc
atcacaggtgcgcttagtagcatggcacgtgatgaagccaaggccaaactgcaagcgctg
ggcgcaaaagtctcgggcagcatatccgcaaaaaccacggcactgctggcaggggagaag
gctggttcgaaaatggcaaaagcggaaaagctgggtgtcaaagtggtgggtgaagatgag
tttttggcgatggttgcggagtag
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