Pseudomonas sp. Y39-6: HXW90_29215
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Entry
HXW90_29215 CDS
T11426
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psyq Pseudomonas sp. Y39-6
Pathway
psyq03030
DNA replication
psyq03410
Base excision repair
psyq03420
Nucleotide excision repair
psyq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psyq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HXW90_29215 (ligB)
03410 Base excision repair
HXW90_29215 (ligB)
03420 Nucleotide excision repair
HXW90_29215 (ligB)
03430 Mismatch repair
HXW90_29215 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyq03032
]
HXW90_29215 (ligB)
03400 DNA repair and recombination proteins [BR:
psyq03400
]
HXW90_29215 (ligB)
Enzymes [BR:
psyq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HXW90_29215 (ligB)
DNA replication proteins [BR:
psyq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HXW90_29215 (ligB)
DNA repair and recombination proteins [BR:
psyq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HXW90_29215 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HXW90_29215 (ligB)
MMR (mismatch excision repair)
DNA ligase
HXW90_29215 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HXW90_29215 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
RNA_ligase
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QPO23362
LinkDB
All DBs
Position
6476489..6478150
Genome browser
AA seq
553 aa
AA seq
DB search
MRLLIVLLLSVLTGLARAEECPDDARAQIGPLARQISLWDDSYHRLGHSPISDELYDQAR
QRLAHWQRCFPQPAAVADKPLASSRGTSPHPVAHTGLGKLLDEHAVGEWLQVRQDVWVQP
KVDGVAVSLVYRQGRLHQVISRGDGLLGQDWSACAKKIPGIVQQLPEPIDLVLQGELYWR
LDDHVQSSLGGLNARSKVAGLMNRRRLSDAEAAGIGLFVWAWPDGPADFTERLATLAGWG
FIDSQRYSRPIQDIVGAARWRTYWYNHPLPFASDGVVLHQATRAPAKRWQVSAPYWAVAW
KYPAAKALALVRKVQFNIGRTGRITPILELEPVRLDDRQISRVSTGSLQRWKTLDIRPGD
QVAISLAGQVIPRLDEVVLRNETRVDIQVPNARDFHALSCWQLDPGCEEQLLSRLTWLSG
NQGLGLPHMGRETWNVLIQAGLIAGFLDWLTLDAAELANIEGFGDRSRARVLDSIQSARQ
RPFAQWLKALGVPPAARNNLEGDWQALVAKDTRAWLALDGIGPGRAAQLSAFFRDPQIQA
LAETLRVAGIDGF
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttgctgatcgttcttttactcagtgttctaaccgggttggccagggctgaagag
tgccccgatgacgcacgggcacaaatcggcccgctggctcggcaaatcagcctctgggac
gacagttaccaccggctcggccattcgcccatcagcgacgaactctacgaccaggcccgc
cagcgcctggctcactggcaacggtgtttcccgcaaccggcggcggtggccgacaagcct
ctggccagctcacggggcacctcgccgcacccggtggcccatacgggcctgggcaaattg
ctcgacgaacacgccgtcggcgaatggctccaggttcgccaagatgtgtgggtccagccc
aaggtcgacggtgtcgccgtgagcctggtgtaccgccaggggcgcctgcaccaagtgatc
agccggggcgacggcttgctcggccaggactggtcggcctgcgcgaaaaaaatccccggt
atcgtccagcaactgccggagcccatcgacctggtgctgcaaggtgagctctattggcgt
ctcgacgaccatgtgcaatcaagcctgggcgggctcaatgcgcgcagcaaggtggccggt
ttgatgaatcgtcgacggttgagcgacgccgaggccgccgggatcggtctgtttgtctgg
gcctggcccgatggcccggcggacttcaccgagcgcctggccaccctggcaggctggggc
ttcatcgacagccaacgctacagccggcccatccaggacatcgtcggcgccgcccgctgg
cgcacctactggtacaaccatccactgccttttgccagtgatggcgtcgtgctgcaccag
gccacgcgcgcacccgccaagcgctggcaggtcagtgcgccttactgggcagtcgcctgg
aaataccccgccgccaaggctctcgcactggtacgcaaggtgcagttcaacatcggccgc
accgggcgcatcacccctatcctggaactcgaaccggtgcgcctggacgaccggcagatc
agccgcgtcagcaccggctccctgcaacgctggaaaaccctggatatccgccccggcgac
caggtcgccatcagcctcgccggccaggtcatcccgcgactggacgaggtggtcctgcgc
aacgagacccgagtggacatccaagtccccaacgcccgggactttcacgccctgagttgc
tggcaactggaccctggctgcgaagaacagttgctgtcgcgcctgacctggttgagcggc
aaccagggcctgggcctgccgcatatgggccgggagacgtggaacgtattgatccaggcc
ggtctaatcgcaggcttcctcgattggttgaccctcgatgcggcagagcttgctaacatt
gagggcttcggcgatcgcagccgtgcgcgggtgctcgacagtatccaaagcgcgcggcaa
cggcctttcgctcaatggctcaaagccctgggtgtaccgcctgcggcacgcaataacctg
gaaggcgactggcaggcgctggttgccaaggacacccgagcctggctggccctggatggc
atcggcccgggccgcgcggcgcaactcagcgctttttttcgcgacccgcagatacaggct
ttggctgagacactacgcgtggccggaatagacgggttttga
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