Psychrobacter sp. YP14: DLE54_02430
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Entry
DLE54_02430 CDS
T05488
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psyy
Psychrobacter sp. YP14
Pathway
psyy03030
DNA replication
psyy03410
Base excision repair
psyy03420
Nucleotide excision repair
psyy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DLE54_02430 (ligA)
03410 Base excision repair
DLE54_02430 (ligA)
03420 Nucleotide excision repair
DLE54_02430 (ligA)
03430 Mismatch repair
DLE54_02430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psyy03032
]
DLE54_02430 (ligA)
03400 DNA repair and recombination proteins [BR:
psyy03400
]
DLE54_02430 (ligA)
Enzymes [BR:
psyy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DLE54_02430 (ligA)
DNA replication proteins [BR:
psyy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DLE54_02430 (ligA)
DNA repair and recombination proteins [BR:
psyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DLE54_02430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DLE54_02430 (ligA)
MMR (mismatch excision repair)
DNA ligase
DLE54_02430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DLE54_02430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Ribophorin_II_3rd
DUF3701
Motif
Other DBs
NCBI-ProteinID:
AWT48501
LinkDB
All DBs
Position
558478..560538
Genome browser
AA seq
686 aa
AA seq
DB search
MTQNTADTHASAQAQEVIAKMRTLIAQVRKHNNAYYVMDEPTISDNEYDQLRLSLIELEE
RYPELTQPDSPTASVGDNPLPSFSQVQHDIAMLSLGNIFNYQDLQEFMRRVNDRLSDADR
NPEYEIEMKLDGLAVSLKYHNGQFVRGVTRGDGQMGEDITQNVKTINNIPLVIEAAQDID
VLEVRGEVLMPKAGFKRLNRLAEENGDKTFANPRNAAAGSLRQLDPAVAASRPLAFYAYS
VNQGLPEAITLQSAALTWLKQLGFTVSDFERVKTAQQVQDYYESMIQKRADLAFEIDGMV
IKVDDLTLQSQLGALSREPRWATAYKFPAETVMTTLNSIEWQVGRTGQLTPVGKLEPVQV
GGVTVSNVTLHNFGEIQRLDVRAGDTVSVHRAGDVIPKVTRVWHDLRPEGTSAVTLPTHC
PVCDSPVVLPEGEALARCTGELFCPAQQQEALIHFVSRKAMDIDGLGERWLISFFEHGIV
KTVADIYHLNEHADELVTLEKLGEKSVSNMLRAIEESKKTTLARFIYALGIRGVGETTAQ
NLAQYFGDLPELMGASIDALEAVPDVGHITAELIYNFFRAEHNIEVINALQQAGVYWDKV
EQQALDNLPLEGQTWVITGTLVASGMSRDDAKAHLQALGAKVSGSVSAKTSALLAGEKAG
SKLTKAQSLGVRVVLEDEFLKMIGAS
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaaacacagcagacactcatgcctcagcacaagctcaagaggtcattgcaaaa
atgcgtaccttgatcgcacaggtgcgtaaacacaacaatgcttattatgtgatggatgag
ccgaccatcagtgacaatgaatatgaccaattgcgcttaagtctcattgagcttgaggag
cgttatcctgagttaactcagcccgacagtccgacggctagcgtgggcgacaatcctctg
ccatcattctcccaagtgcagcatgacattgctatgctgtcactgggtaatatttttaat
tatcaagacttacaagagtttatgcgccgggtcaatgaccgtctaagtgatgctgatcga
aatcctgagtatgagattgagatgaaattagatggcttggctgtttcattaaaatatcat
aacggacaatttgtgcgcggcgtgactcgcggcgatggtcaaatgggcgaggacattacc
caaaacgtgaagaccatcaataacattcccctggtgatagaagcggcgcaagatattgat
gtgctggaggtgcggggcgaggtactgatgccaaaagcaggctttaagcgcttaaaccgt
ttggcagaagaaaatggtgataaaacctttgccaacccccgtaacgcagcagcaggtagt
ctacgtcaattagacccagccgtggctgccagtcgtcctttggctttttatgcgtattcg
gtgaaccaaggcttgcctgaagcgattactttgcaatcggcggctttgacctggcttaag
cagttaggctttactgttagtgactttgaacgggtaaaaacagcccaacaagttcaagac
tactatgagtcgatgatacaaaaacgggcagatttagcctttgaaattgatgggatggtc
attaaggtcgatgacttaacgctacaaagtcaactgggcgcgttatctcgtgaaccgcgc
tgggccaccgcctataagttccctgctgaaacggtgatgaccacactcaatagtattgaa
tggcaagtggggcgtaccggtcagctgactccagtgggcaagcttgagccagtgcaagtg
ggcggtgtgacggtcagtaacgtgaccttgcacaacttcggggaaatccagcgccttgat
gtgcgtgcaggtgataccgtcagcgtccatcgagcgggcgatgtgatacctaaagtgact
cgggtatggcatgatttgcgccctgagggtacctcggcggtgacgctgccaacccactgt
cctgtgtgcgactcacctgtggtattgccagagggtgaagccttggcacgctgcaccggt
gagctgttttgtcctgcgcagcagcaagaggcactaattcactttgtatcacgtaaagcg
atggatattgatgggctcggtgagcgctggttaatcagtttctttgagcatggcatcgtc
aaaactgtggccgatatttatcacttaaatgagcatgctgatgagctggttactctagaa
aaattgggcgagaagtccgttagcaatatgttgcgcgccattgaagagagtaaaaaaacc
acactggcgcgctttatctatgcgctaggcattcgcggtgtgggagagaccacagcacag
aatctggcacaatattttggtgatttgcctgaattgatgggtgccagcattgacgcctta
gaggccgtacctgacgtgggccatattaccgctgagcttatttataatttcttccgtgct
gagcataacatcgaagtcattaacgcattgcagcaagctggcgtgtattgggataaggta
gagcagcaggccttagacaatctgccccttgagggccaaacgtgggtaataacaggtacc
ttggtcgccagcggtatgtcacgcgatgatgccaaggcgcatctgcaagctttgggtgca
aaggtctcaggcagcgtatcggccaaaacctcggcattattggccggtgaaaaggcaggc
tctaagttgaccaaagcgcagagtctgggggtgcgtgtggtgttagaggatgagttctta
aagatgattggggcgtcatga
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