Primulina tabacum: 142532712
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Entry
142532712 CDS
T11246
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ptab Primulina tabacum
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ptab03036
]
142532712
03400 DNA repair and recombination proteins [BR:
ptab03400
]
142532712
Chromosome and associated proteins [BR:
ptab03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
142532712
DNA repair and recombination proteins [BR:
ptab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
142532712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
HATPase_c
Motif
Other DBs
NCBI-GeneID:
142532712
NCBI-ProteinID:
XP_075495210
LinkDB
All DBs
Position
18:3424092..3439053
Genome browser
AA seq
1621 aa
AA seq
DB search
MFSKTPPSILGKRPNEEPSKERPRKNLFGGVKVESDALLANKIFWFRILLPNGTTLELKM
TELRSHMPIEEFIAAVKREYFNTVPRTGSGQPETRINWTYADLHFTDADGNKMRTEVKFR
DLLPNKRHILALNDGSAEPEAYEDMWDLTPDTDLLKELPDEYTFETALADLIDNSLQAVW
SNDSNHKGEKRLISVDLCKNRISIFDTGPGMDGVNEKIVKWGKMGSSMHREEREQAIGGE
PPYLMPFFGMFGYGGPVATMFLGRHAVVSSKTKTCNKVFTLHLERDALISPSRTENRWKT
KGGMRDPLDDEMSKSRHGSFTKVEILGPKRSTLDVKKLQCKLKDIYFPYIQCDEMSGKTS
RPIEFRVNGIDLTEIIEGGEVAITNMHSCNGPEFTLQLHFSYSDDASSPSCQRKNGFLDA
NAWLRCVYFPIIKGEESITRIITKLEADGFEIRESFENYSRVSVRRLGRLLPDTRWTWLP
FMEPKAKKGEKAQNLKRCRYRVKCFIETDSGFNPTPTKTDLAHHHPYTNALKNFGSGTPV
NGKELQIEILRDGKKLTLTTLEKQYSDWISEMHDLYDDEIESGLDQPTILISPENKKLGI
SSDVIRVHKEIQRKRTCWKAGQRMKILKGACAGFHKNNVFATLEYIILEGLPGDACGEAR
LICRPLGLPEAKGCRLSDNGNNVLDIGESLSLSISVIDSEKCIAVSDIEWNSQLEKHRQK
LPSGIDLLSLEECQELEIGGGFPTNIIKAGNAFPQKIVAVVRPKAFDSASSTKRLDQKFI
VRENFEMILEVNFRVEESARSGHIYSVRIKPSSHKGLQGLYIFLLSSKIEKFQKAGYYTF
LFSLADVKDVHFQKAVQVQALAEIGSWRLVNHNQNSQCTIRVGCRTPSISIACYDRYNNR
LPFTSTPRPTIKLIKGSHVLAQVRHMKVTADKSVMTIKNIVVECHDLDKIRPKYEAYLKI
SSVDKALSVNCPCQVLPGSPKIITTLPPKLRKQLLPGQIIEKLVLEVFDEYGNHVGKDEN
ILLRVDGFSFLDGSSAVRNVVTDCNKMVDARGYVDLSDVLKVSKGYGKDVSLSVISKDKV
IFKMEFQTERRELRTDSKIFKYCEAGSELENILFEIVDADGVVDENINDNEKHGQIHTLI
LKSDSMDMDNFVRYSFSRGRSTVRSIHLPQREGIFTLTAFHSHYPDLKVDIEVHVQNDRG
ENLELADHEDYMDPEIFPKASFRNALPLPRTPVLDVPDIEPVNVSPQGLKENILHSDYSS
CLKNPKPEHQNAQNENSGDRSNFAGNSLICLKELEDDLTNCGLTIGNHESDLKMLKQKQS
TLQKHISDLQALVIELDALSTFGKECIEQKIESRGDSASAFLCKLRKLALEDRPKGVLGV
VALLGSVQTIELSRMLAQYLGEDQMLAIVCENYAAAESFDTRFSSKFGQSSSGRYLTLCL
EDTRTNGNELESDSQNLDSLQEPTLPNGCSTPHGFLGYAVRLVNMEAVHSHGTRKNDIST
RQTLLCCLFGELQVYENKQCMKMARACIRDGAISLDGGIMKRNGLISFGNWEQVTPDVIF
PVVNKMPVSLTRLKASKCMVERESELAEVTREIDEKNTLYKIDMEIFQRSRNRYNLYLSQ
M
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atgttctcaaaaacacctccgagcattttgggcaagaggcctaacgaagagcctagtaaa
gaaaggcctagaaagaatctatttggaggtgtgaaggtcgaaagtgatgcgcttcttgct
aacaaaattttctggttccgcatccttttaccgaatggcacgacccttgagctcaaaatg
accgagcttcgtagtcacatgcccattgaggagtttatcgctgctgtcaaaagagagtac
tttaatacagtcccacgaacagggtctggacaacccgagacaagaattaattggacgtat
gcagatttgcattttacggatgcagatgggaataagatgagaaccgaagtgaagtttcgt
gatttgctacctaataagcggcatatcctcgcgcttaatgatggttcggctgagcctgaa
gcatatgaggatatgtgggatctcacccctgatacggatttattaaaggagctgcctgat
gaatatacatttgagactgcccttgctgacttgatagataattctttgcaagctgtgtgg
tcaaatgactcaaatcacaaaggcgagaaaagattaataagtgtggacttatgtaaaaac
agaatttcaattttcgacacaggaccaggaatggatggagtgaatgagaaaattgtaaag
tggggaaaaatgggatcgtccatgcacagagaagaaagggaacaagccattgggggagaa
cctccatatttaatgcctttttttggaatgtttggctatggaggtcctgttgccacaatg
tttttaggaaggcatgcggtagtctcatccaagaccaagacctgtaataaagtttttacg
ttgcacttggaaagagatgcattaataagcccttcacgtacagaaaaccggtggaagaca
aaaggagggatgagagatcctcttgatgatgaaatgagtaaatcccgtcatggaagcttc
acaaaggttgaaatactggggcctaaaagaagtaccctggatgtaaagaaactccagtgc
aaattgaaagacatttacttcccctatattcagtgtgacgaaatgtcaggcaagacaagt
agacctattgaatttcgggtcaatggaattgatttaactgaaataatagagggaggggaa
gtggccataacgaacatgcattcttgcaacggtccggagttcactctgcaacttcacttc
agctacagtgatgatgcttcttcaccaagttgtcaaagaaaaaatggatttcttgatgca
aatgcctggttgaggtgtgtttactttccaataattaagggtgaagagagtattacaaga
ataattacaaagttagaggctgatggatttgaaataagagagagctttgagaattatagc
agggtttctgtcaggcgcttgggtcgtctcttgccagatactcgctggacttggcttcca
tttatggaaccaaaggcaaaaaaaggtgagaaggcccaaaatctgaaacgatgccgctac
cgtgtcaaatgttttatagagacagattctggttttaatccaacaccaaccaagacagat
ttagcccaccatcacccatacaccaatgccttgaagaattttggcagtgggacccctgta
aatggaaaagagttgcaaattgaaatcttgagagatggaaagaagttgactctcacaaca
ctggaaaaacagtacagtgattggatttcggaaatgcatgatctctatgatgatgaaatt
gaaagtggtctggatcaacccactattcttatttctccagagaataaaaagcttggcata
tcttcggatgttattagggttcataaagagattcagagaaaaaggacatgctggaaggca
ggacagaggatgaaaatattgaagggagcatgtgctggatttcataaaaacaatgtattt
gctacactagagtacataatccttgaagggcttccaggggatgcttgtggcgaggctcga
ctgatttgcaggccacttggtctacctgaagcaaaaggttgccgtctatcagacaatgga
aacaatgtcctagacattggcgagtctctatcgttatcaattagtgtgattgactcagaa
aagtgcatagctgtcagtgatattgagtggaatagccaacttgagaaacatagacagaaa
ttgccttctggcattgatctattaagtcttgaagaatgccaagaattggaaattggaggg
ggattccctaccaatattataaaagctggaaatgcattccctcagaaaattgttgctgta
gtgcgaccaaaggcttttgattctgcctccagtactaaaagattggatcaaaagttcatt
gtcagagaaaattttgagatgattctagaagtcaacttcagagtcgaagagagtgccaga
agtggtcatatttattctgtgaggattaaaccctcatctcacaaggggttacaaggcttg
tacatatttcttttgagttcaaaaattgaaaagtttcagaaagctggctactatacattc
ttattctcactggctgatgtgaaggatgtacattttcaaaaagcagtgcaagttcaggca
ttggctgaaattggcagttggagacttgtgaatcataatcagaattcccaatgcacaatt
agggttggttgtcgcaccccatctatttccatagcatgctacgatcgatacaataacagg
ctccctttcactagcactccacgaccaactatcaaactcattaaaggcagccatgttctt
gctcaagtacgtcacatgaaagtaacagctgataagtcagtcatgacaattaagaacatt
gttgttgaatgccatgatttggacaagattcgtccaaaatatgaggcttacttaaaaata
agttctgtagacaaagcactatctgtcaattgtccttgtcaagtccttccaggatcacca
aaaataataaccactcttccaccaaaattaagaaaacaattgcttccgggacagataatt
gagaagctggtactcgaagtatttgatgaatatggcaaccacgtaggaaaagatgagaat
attttgttgcgagttgatggattctcttttctggatggcagcagtgctgtccgcaatgtg
gttactgattgtaacaaaatggtagatgccaggggatacgtggacctgagcgatgttctt
aaagtttccaagggatatggcaaagatgtatctctctctgtgatatccaaagacaaagtc
atattcaaaatggagtttcaaactgaaagaagagaacttcggacagattcaaagattttc
aagtactgtgaagcaggttctgaattggagaatattttgtttgaaattgttgatgctgat
ggtgttgtggatgaaaatataaatgataatgagaaacatgggcaaattcatactcttatt
ttaaagtcggattcaatggatatggataattttgtgcgatatagcttctcccgtggacgc
agtactgttcgctctattcatcttcctcagagagaagggattttcacacttacagctttt
cactcacattatccagatctgaaagtggatatagaggttcatgttcaaaatgatcgggga
gagaatctggaattagcggatcatgaagattacatggatcctgaaatttttcccaaagct
tctttcagaaatgcactgccactccctcggacacccgtcctcgatgttccagatatcgag
cctgttaatgtttctccacaaggtttgaaggaaaatatattacattcggattattcaagt
tgtttaaagaatccaaaaccggagcatcagaatgcccagaacgaaaattctggggataga
agcaattttgctgggaattcattgatttgcttaaaggagcttgaggatgatcttactaac
tgtgggttgacaattggaaatcatgaaagtgatttaaagatgctaaaacagaagcagtca
acacttcagaaacatatatcagatctccaagctcttgtaatagaacttgatgcgctgagc
acatttggaaaagagtgcattgagcagaaaattgaaagcagaggtgattctgcatcggct
tttctttgcaaattaagaaaactagcattggaagataggccaaagggcgtacttggtgtc
gtagctcttcttggatcagtacagaccattgagcttagcaggatgttggcacaatatctc
ggtgaggatcaaatgctcgcaattgtgtgtgaaaactatgctgctgctgaatcctttgat
actcgtttctctagcaagtttggacaatcttcaagtggaagatatcttactctgtgccta
gaggatacaaggacaaatggaaacgagttggaaagtgattcccaaaatctggactccttg
caggagcctaccttgccaaatggctgtagtaccccccacggatttcttggatatgccgtt
cgcttggtaaacatggaagcagtccattcacacgggacaaggaaaaatgatattagtacc
cgacaaacgttattgtgctgcctctttggggagcttcaagtatatgagaacaagcagtgt
atgaaaatggcacgtgcctgcattagggatggagccatctctttagacggtggcatcatg
aaacgaaacggactaatatcctttggcaactgggagcaagttacacctgatgtcatattt
ccagttgtgaacaagatgcccgtttcgcttacgaggttaaaagcttcgaaatgcatggta
gagagggagtcggagctagcagaggtaacccgtgagatagatgagaagaacacattgtat
aaaatagatatggaaattttccaacgttcacgcaacaggtataacctttacttatctcaa
atgtaa
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integrated database retrieval system
