Pseudomonas taetrolens: NCTC10697_01597
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Entry
NCTC10697_01597 CDS
T08085
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptae
Pseudomonas taetrolens
Pathway
ptae03030
DNA replication
ptae03410
Base excision repair
ptae03420
Nucleotide excision repair
ptae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10697_01597 (ligA)
03410 Base excision repair
NCTC10697_01597 (ligA)
03420 Nucleotide excision repair
NCTC10697_01597 (ligA)
03430 Mismatch repair
NCTC10697_01597 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptae03032
]
NCTC10697_01597 (ligA)
03400 DNA repair and recombination proteins [BR:
ptae03400
]
NCTC10697_01597 (ligA)
Enzymes [BR:
ptae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10697_01597 (ligA)
DNA replication proteins [BR:
ptae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10697_01597 (ligA)
DNA repair and recombination proteins [BR:
ptae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10697_01597 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10697_01597 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC10697_01597 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10697_01597 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
SQF85841
LinkDB
All DBs
Position
1:1666087..1668438
Genome browser
AA seq
783 aa
AA seq
DB search
MTAANTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFRELKALEAEHPELVTADSPTQ
RVGSTALSAFTQVRHEVPMLSLGNAFDDTDMREFDRRVSEGLDLPAGDLFGGGAEVEYSC
EPKLDGLAVSLLYQDGYLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPAVLEVRG
EVFMSKAGFDRLNEAQLAAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQVSE
EFSDTHIGNLKQLQQWGMPISHELKLARGIADCLDYYRDIGERRASLPYEIDGVVFKVNS
LASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVLERRPGDARPVHIPERCPVCGS
HVERTQLVKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVSSPADLYTLTFEQIVDLEGFAELSSKNLLQAIADSKRPALARFIYALGIPDVG
EETAKVLARSLASLERVQRALPQVLTYLPDIGLEVAYEIHSFFSDAHNQQVIGQLLERGL
ELQDQGELGAEFAASTTLGGLIDKLHIPSVGPGGAQKLAEKFGSLQGVIEADWLDMRQAL
PEKQAKSVREFFDSPDNARAALAIEAQLRDFGMHWQSEKKTVEGLPLAGQTWVLTGSLEL
MSRDVAKARLESLGAKVSGSVSGKTHCVVAGPGAGSKLVKANELGLKVLDEEAFVAFLSQ
PGI
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaacacccgcattctagagctgcgcgctgaactggatcagcataactat
cgttatcacgtgctcgacgagccgagcattccggacgccgagtacgatcgcctgttccgt
gagctgaaagcgcttgaggctgagcatccggagctggtcacggcggattcgcccacccag
cgcgtcggcagtacggcgctttcagcttttactcaggtgcgtcatgaagtgcccatgcta
agcctgggcaacgccttcgacgacaccgatatgcgtgagttcgaccggcgtgtcagcgaa
ggtctggacctgccggcaggtgatctgttcggtggcggtgccgaggttgagtacagttgc
gagcccaagctggacgggttggcggtcagtttgctgtatcaggatggctatttggtgcgc
ggcgctacccgaggtgatggcaccacgggtgaagacatcagcgtcaacgtacgcaccgtg
cgcaatattccgctcaagctgcatggcagcggctggcctgcggtgctggaagtgcgcggc
gaagtctttatgtccaaggccggtttcgatcgacttaatgaggcccagttggcggcaggc
ggcaaaacctttgccaatccgcgcaacgctgcagcaggcagcttgcgtcaactggactcg
aaaatcaccgcgagccgtccattggagttctgctgctacggcctggggcaagtgtctgaa
gaattttcggacactcatatcggcaatctcaagcaactgcagcagtggggcatgcccatc
agtcatgagttgaagctggcccggggcattgccgactgcctggattactaccgtgacatt
ggtgagcgccgggcttctcttccctatgagatcgatggcgtggtgttcaaggtcaacagc
ctggcatcgcagcgcgagctgggcttccgtgcccgtgagccgcgctgggccattgcgcat
aaattcccggcaatggaagagctgactgagttgctggatgtggaattccaggtcgggcgt
accggtgcggtgaccccggtggctcgcctcaagccggtcaaggtggccggtgtcacggtg
tccaatgccacgctgcataacatggacgaagtcgcgcgcctggggctgatgatcggcgat
acggtgatcattcgtcgcgccggagatgtgatcccgcaagtggtgcaggtggtgcttgag
cgtcgccccggggatgcgcggccggtgcatattcctgagcgctgtccggtgtgtggctcc
catgtcgagcgcacacagttggtcaagcgcagcaagggccgtgaaaccatcagtgaaggc
gcggtgtatcgttgtgtcgggcgtctggcctgtggtgcccagcttaaacaggcgattatt
cattttgtttctcgccgggcaatggatattgaaggcctgggtgagaagagtgttgaacag
ttggtggacgaaggcctggtgagctcaccggctgacctgtacaccctgaccttcgagcag
atcgtcgacctcgaaggctttgccgagctgtcgagcaagaacttgctgcaggccattgcc
gacagcaaacgcccggccttggcacgcttcatctatgccctgggcatcccggacgttggt
gaagaaaccgccaaggtgcttgcgcgctcgctggcctctctggagcgcgtacagcgcgcg
ttgccgcaagtgctcacctatttgccggatatcggtctggaggtggcttatgagatccac
agcttcttcagcgatgcgcacaaccagcaggtgatcggtcagttactggagcgaggcctg
gagctgcaggatcaaggtgagctgggtgctgaatttgcggccagtaccacattgggcggg
ttgatcgacaagctgcacattccttcggttgggccgggtggcgcacaaaagctggccgaa
aaattcggctcgctgcagggtgtcatcgaggccgactggctggacatgcgtcaggcgttg
cccgagaagcaggccaaatcggtgcgtgagtttttcgactcgcctgacaacgcccgggct
gcgctggcgatcgaagcgcaactgcgggacttcggcatgcactggcagagcgagaaaaag
accgttgaaggcttgccgctggctggacagacatgggtcctgaccggctcgctggaattg
atgagccgcgatgtagccaaagccaggctggaaagcctgggcgccaaggtctcgggctcg
gtgtccggtaaaacccattgcgtggtggcggggccgggagccggttcaaaactggtcaag
gccaatgagctggggctcaaggtgctggatgaagaagcctttgtagcgtttttgagccag
ccgggcatctga
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