Parvicella tangerina: CRYO30217_00278
Help
Entry
CRYO30217_00278 CDS
T08372
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptan
Parvicella tangerina
Pathway
ptan03030
DNA replication
ptan03410
Base excision repair
ptan03420
Nucleotide excision repair
ptan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CRYO30217_00278 (ligA)
03410 Base excision repair
CRYO30217_00278 (ligA)
03420 Nucleotide excision repair
CRYO30217_00278 (ligA)
03430 Mismatch repair
CRYO30217_00278 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptan03032
]
CRYO30217_00278 (ligA)
03400 DNA repair and recombination proteins [BR:
ptan03400
]
CRYO30217_00278 (ligA)
Enzymes [BR:
ptan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CRYO30217_00278 (ligA)
DNA replication proteins [BR:
ptan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CRYO30217_00278 (ligA)
DNA repair and recombination proteins [BR:
ptan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CRYO30217_00278 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CRYO30217_00278 (ligA)
MMR (mismatch excision repair)
DNA ligase
CRYO30217_00278 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CRYO30217_00278 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
5_3_exonuc
HHH_3
HNOB
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
CAG5077053
UniProt:
A0A916NPM4
LinkDB
All DBs
Position
1:295005..297068
Genome browser
AA seq
687 aa
AA seq
DB search
MSKERIAELTDKLNQWNHEYYVLSNPSVSDYDFDMALEELQKLEEQFPEFADPNSPTKRV
GGDITENFKKVKHRFPMLSLSNSYSREEIEEFVERIDRSIGGDIEFVCELKYDGVAISLT
YEEGVLVRAVTRGDGTEGEEVTANVRTIRTVPLKLHGEFPAFFEIRGEIVFPLEAFNQLN
LEREEAGEPTFANPRNTASGTIKMQDSSIVASRGLDCYLYHVYAEENVGKGHLESILEAE
SWGFKVPQVTDKYIAKASTMDEVMAFIDHWDQHRSQLPFEIDGIVIKVNDFSIQEELGFT
AKSPRWAIAYKFKAERVLTELQSITYQVGRTGAITPVANLAPVQLAGTTVKRASLHNADQ
IEKLDLRVGDMVYVEKGGEIIPKVVGVNLDQRPTSAVPVAYPTTCPECGTGLIRKEGEAQ
HYCPNDAGCAPQLKGKIEHFIGRKMMNIDGLGSETVEQLFDAGLIKNVADLYDLTKEQVL
PLERMAEKSATKLINGIEASKKVPFEKVLFALGIRYVGETVAKKLAKHFESLENIQNATF
EELVAVDEIGDKIAESIEEYFSKEENIKLLERLKAAGLTFEIGEQAQASGDALEGKTLVV
SGVFTRSRDEMKALIEQYGGKVGSSISSKTDYLIRGEKMGPSKLQKAEKLGVPMISEEEF
MELLGGEVQEHIEGQSNIKGSSQGTLF
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagagagaatagctgaacttactgacaagttgaatcaatggaatcatgaatac
tatgtgttgagtaatccatcagttagtgattatgactttgatatggcactagaggagctt
cagaagttggaagagcagtttccagagtttgcagaccctaattcacccacgaaacgtgtt
ggaggagacattacagaaaactttaaaaaagtaaagcatcgatttccgatgttgtcttta
agcaatagctattcaagagaagagatcgaggagtttgttgaacggatcgatcgatccatt
ggtggtgatattgagtttgtatgcgaactcaaatatgacggggttgcaatatctttgact
tatgaagaaggtgttttagtgagagcagtaacccgaggtgatggaacagaaggagaagag
gtaactgcaaatgttcgaacaataagaacagttcctttaaagctacatggtgagtttcct
gctttttttgagatcagaggtgagatcgttttcccattggaagcatttaatcaactcaat
ctagaacgagaagaggctggtgaacctacgtttgctaatcctagaaacacggcttcaggt
acgattaaaatgcaagactcatccatcgtggctagtcgggggttggattgctacctctat
cacgtttatgctgaagaaaacgttgggaaaggtcatttagaaagtattttggaagcagag
agctgggggtttaaagtgcctcaggtgacggataagtatattgccaaagcatctactatg
gatgaagtgatggcgttcattgatcactgggatcaacatcgcagtcaattacctttcgag
attgacggcattgtgatcaaggtgaacgattttagcattcaagaggaattgggttttacg
gctaaatcaccgagatgggcgattgcttacaagttcaaagcagagcgagtacttacggaa
ttgcagtcgattacttatcaagtgggaagaactggtgcaatcactcctgttgccaactta
gcgcctgttcaactggctggaacaacggtgaaaagagcaagtttgcataatgcagatcag
attgaaaaacttgacctcagagttggcgatatggtgtatgtggagaaaggaggggagatc
attccaaaggtggtaggggttaatttggatcaaagaccaacctctgctgttcctgttgcc
tatccaacaacttgtccggagtgtggaacgggtttgatacgaaaagaaggcgaagcacag
cattattgtccaaatgacgcgggttgtgctccacaacttaagggtaagattgaacacttt
attggtcggaagatgatgaatattgacggactaggatcggagacggtagaacaattattt
gatgctggcttgattaagaatgtagctgatttatatgatctaaccaaagaacaggtgttg
ccattggaaagaatggccgagaagtctgcaaccaagttgatcaatggaatagaagcttcc
aagaaagtgccttttgaaaaggtattgtttgctctgggtatcaggtatgttggtgaaacc
gttgctaagaaattagcaaaacattttgagtctcttgaaaacatccagaatgctactttc
gaagagttagttgctgtagatgagattggtgataagattgctgagagtattgaggagtac
ttctccaaagaagaaaacatcaagttattggaaagattaaaggcggctgggttaaccttt
gaaatcggagagcaagctcaggcttcaggtgatgcgctcgaaggaaagacgttggtggta
agcggtgtgttcacccgttctcgagacgaaatgaaagcgctcatcgaacagtatggaggt
aaagtagggtcttccatttcatcaaaaacagactacctgattcgaggcgagaaaatgggt
ccctcaaaacttcaaaaggctgaaaagcttggtgttccaatgatctcagaagaagagttt
atggaactgctagggggtgaggttcaggaacatatcgaagggcaatcgaatataaaaggt
tcaagtcaaggcactttgttttaa
DBGET
integrated database retrieval system
