Pseudoalteromonas tetraodonis: PTET_a2226
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Entry
PTET_a2226 CDS
T05282
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptd
Pseudoalteromonas tetraodonis
Pathway
ptd03030
DNA replication
ptd03410
Base excision repair
ptd03420
Nucleotide excision repair
ptd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PTET_a2226 (ligA)
03410 Base excision repair
PTET_a2226 (ligA)
03420 Nucleotide excision repair
PTET_a2226 (ligA)
03430 Mismatch repair
PTET_a2226 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptd03032
]
PTET_a2226 (ligA)
03400 DNA repair and recombination proteins [BR:
ptd03400
]
PTET_a2226 (ligA)
Enzymes [BR:
ptd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PTET_a2226 (ligA)
DNA replication proteins [BR:
ptd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PTET_a2226 (ligA)
DNA repair and recombination proteins [BR:
ptd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PTET_a2226 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PTET_a2226 (ligA)
MMR (mismatch excision repair)
DNA ligase
PTET_a2226 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PTET_a2226 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ATD03580
LinkDB
All DBs
Position
I:complement(2147414..2149453)
Genome browser
AA seq
679 aa
AA seq
DB search
MFFEVYMTSSISEQINHLRTTLEQHNYSYYVLDTPSIPDAEYDRLLRTLSELETQHPEFL
TADSPTQKVGGAALAKFEQVAHQVPMLSLDNAFGEDEFSGFNRRIKERLMSTEELAFCCE
PKLDGLAVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDDYPRELEVRGE
VFMDSAGFEKLNAEAEKRGDKIFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADG
TLPEDHYQQLAKLTDWGLPLCPETKLVEGPKAALAYYNDILTRRSELKYEIDGVVIKVNK
KALQERLGFVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTV
SNATLHNADEIARLGVKVGDTVIIRRAGDVIPQITQVVLEQRPSDAKEIVFPTMCPICDS
HIERVEGEAVARCTGGLVCQAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPAD
LFTLKQGHFESLERMGPKSAKNLVAALDDAKTTTLAKFLYSLGIREVGEATAQNLANHFL
TLENVIDASIEQLIEVSDVGEIVAKHVRGFFTEEHNLTVVNELIAQGINWPQLTAPSEQE
QPLAGLTYVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQEF
GIEILTEDDLITLLETHNG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgttttttgaggtctacatgacaagcagcattagtgagcaaattaatcatcttcgtacc
acgcttgagcaacacaattatagttattatgtgcttgatacacccagcatacctgatgcc
gaatatgaccgcttgttacggacactaagtgaattagaaacccagcaccctgagttttta
acagccgattcacccactcaaaaagttggaggagcggcgcttgccaagtttgagcaagta
gcgcaccaagtgcctatgttatcgcttgataacgcctttggtgaggatgaatttagcggt
tttaatcgtcgtattaaagagcgcttaatgagcactgaagagcttgcattttgctgtgag
cctaaactggatggtttagcggtttcgattatttatcgcgatggagtactggttcaagcg
gcgacccgtggcgatggttttactggcgaaaatattactcaaaatgtaaaaacaatccgc
aatgtgccattaaaattgcgcggtgatgattaccctcgtgagcttgaagtgcgcggtgag
gtatttatggatagcgcgggctttgaaaaattaaatgcagaggcagaaaaacgtggcgat
aaaatctttgttaatccacgtaatgcggcggcaggaagtttacgccagctcgactcaaaa
attaccgcaaaacggccattgatgttttatgcctacagcaccggattagttgccgatggc
accttacctgaagatcactaccagcaacttgctaagcttaccgattggggattaccgctg
tgtccagaaaccaaattagttgagggcccaaaggctgcgcttgcctattacaatgacatt
ttaacgcgtcgtagcgagctaaaatatgaaatagatggcgtggtaataaaggtaaataaa
aaagccttacaagagcgcttaggctttgtagctcgcgcaccgcggtgggcaatcgcttat
aaatttccggcgcaagaagaaataacgcaattattagatgttgaatttcaagtagggcgc
acaggggcaattactcccgtagcacgactagagccggtatttgttgggggtgttacggta
tcaaatgcaacgctgcataatgccgacgaaatagctcgtttaggcgttaaagtgggcgat
actgtgattattcgccgcgcaggggatgttatcccgcaaattactcaagtggtacttgag
caacgcccaagcgatgcaaaagagattgtctttccaactatgtgcccaatttgtgactcg
catattgaacgggttgaaggtgaagccgttgcacgttgtaccggtggcttagtatgccaa
gcacagcgtaaacaagcgattaagcattttgcatcgcgtaaggcattagatattgacggc
ttgggcgacaaaattgttgatcaattagttgaccgagagctgatcaaaaccccggctgat
ttatttactttaaagcagggacattttgaatcacttgaacgaatggggcctaaatcagct
aaaaatttagttgccgcgcttgatgatgcaaaaacgactaccttagcaaagtttttatat
tcactgggtattcgtgaagtcggtgaggcaaccgcgcaaaacttagctaatcatttttta
acgcttgaaaacgtaatcgatgccagcattgaacagctgattgaagtaagcgatgtaggt
gaaatagtggcaaagcacgtgcgtggcttttttactgaagagcataatttaaccgtggtg
aacgaattaatagcccaaggcattaactggccacagttaacagcgccatcagagcaagaa
caaccgctagcgggtttaacttatgtgctaactgggacgcttaatacgcttaatcgcaat
gatgcgaaagcgcgcctacaacaattaggtgccaaggtatctggcagtgtttcagccaaa
acggatgcgctagtggcgggcgaaaaagccggctctaaactaactaaagcgcaagaattc
ggtatagaaatactgacagaggatgatttaattactttgttagagactcataatggctag
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