Paraburkholderia terrae: C2L65_06295
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Entry
C2L65_06295 CDS
T05318
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pter
Paraburkholderia terrae
Pathway
pter03030
DNA replication
pter03410
Base excision repair
pter03420
Nucleotide excision repair
pter03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pter00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C2L65_06295 (ligA)
03410 Base excision repair
C2L65_06295 (ligA)
03420 Nucleotide excision repair
C2L65_06295 (ligA)
03430 Mismatch repair
C2L65_06295 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pter03032
]
C2L65_06295 (ligA)
03400 DNA repair and recombination proteins [BR:
pter03400
]
C2L65_06295 (ligA)
Enzymes [BR:
pter01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C2L65_06295 (ligA)
DNA replication proteins [BR:
pter03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C2L65_06295 (ligA)
DNA repair and recombination proteins [BR:
pter03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C2L65_06295 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C2L65_06295 (ligA)
MMR (mismatch excision repair)
DNA ligase
C2L65_06295 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C2L65_06295 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
MctB
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AUT59247
UniProt:
A0A2I8EI35
LinkDB
All DBs
Position
1:1405358..1407409
Genome browser
AA seq
683 aa
AA seq
DB search
MARTNVPDPATSAPAERALWLRAELERANHAYYVLDQPDLPDAEYDKLFKELQQVESEHP
DLITPDSPTQRVGGEVANGFQPVVHDLPMLSLNNGFSDEDIAAFDKRVSDALHEASVDYA
CELKFDGLAISLRYVDGQFTQASTRGDGATGEDVTENVRTIRSIPLKLKGKRVPKLLDVR
GEVLMFKRDFDKLNQRQRDAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLD
GIEMPATHSELLDWYHEMGLPVNSERAVVQGAEGLLGFFQKVGEKRDKLPYDIDGVVYKV
NRRDQQDTLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGA
TVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAHEFVMPTQCPVC
GSAIERLPDEAIARCSGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTP
ADLFNLGFATLAELDRFAEKSAQNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKH
FGSLTPIMDASVEELLEVNDVGPIVAEAIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAP
KAPQGVLAGKTVVLTGTLPTMGRDEAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAK
AEELGIPVLDEDGMRKLLEGQTT
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaaccaacgtccctgatccagcaaccagcgcacccgccgagcgggcgttgtgg
ctgcgcgccgaactcgagcgcgcgaaccacgcgtactatgtgctcgaccagccggacttg
cccgacgcggaatacgacaagctgttcaaggaactgcagcaggtcgaaagcgagcatccc
gatctgatcacaccggattcgcccacgcagcgggtcggcggcgaagtggcgaacggcttt
cagcccgtcgtacacgacctgccgatgctgtcgctgaacaacggcttttcggatgaagac
atcgcggctttcgacaagcgcgtgtcggacgcgctgcacgaggcgagtgtcgactacgcg
tgcgaactgaagttcgacggtctggccatctcgctacgctacgtggacggccagttcacg
caggcgtccacgcgcggcgacggcgcgacgggcgaggacgtcacggagaacgtgcgcacc
atccgctcgatacctttgaagctcaagggcaagcgcgtgccgaagctgctcgacgtgcgc
ggcgaagtgctgatgttcaagcgcgatttcgacaagctgaaccagcgtcagcgtgacgcg
gaacagcgcgagttcgcgaacccgcgcaatgcggcggcgggcagtttgcggcaactcgat
tcgaagatcaccgcgcagcgtccgctgtcgttctttgcgtatgggatcggcgtgctcgac
ggcatcgagatgccggccacgcatagcgaactgctcgactggtatcacgagatgggcttg
cccgtgaacagcgagcgcgcggtcgtacagggcgccgaagggttgctcggcttcttccag
aaggtgggcgagaagcgtgacaagctgccgtacgacatcgacggcgtcgtctacaaggtg
aaccgccgcgaccagcaggacacgctgggtttcgtgtcgcgcgcaccgcgcttcgcgctc
gcgcacaagttccctgcgcaagaggcgttgacgaagctcgtcgccatcgacgtgcaggtc
ggacgcacgggcgcgatcacgcctgtcgcgcggctcgaaccggtgttcgtcggcggcgcg
acggtgacgaacgcgacgctgcacaacgaggacgaagtacgtcgcaaggacatccgtatc
ggcgacaccgtgatcgtgcggcgtgcaggcgacgtgattccggaggtagtcggcgcactg
ctcgaccggcgtccggccgacgcgcacgagttcgtgatgccgacgcaatgccccgtgtgc
ggttccgcgatcgaacgtctgccggacgaagcaatcgcgcgctgctcgggcggcctgttt
tgtcctgcgcagcgcaagcaggcgctgtggcactttgcgcagcgccgcgcgctcgatatc
gacggcctgggcgaaaagatcatcgatcaactcgttgaactgaatctggtgcgcacgccc
gccgatctattcaacctgggctttgcgacactcgccgaactcgaccgcttcgcggaaaag
tccgcgcagaacctcatcgactcgctcgaaaaggccaagcacaccacgctcgcgcgcttc
atctacgcgctcggcatccggcatgttggcgaatcgacggcgaaagatctggcgaagcac
ttcggctcgctcacgccgatcatggatgcatcggtcgaagaactgctcgaagtgaacgat
gtcggccccatcgtcgccgaggcgattcatcagttctttgccgaggagcacaaccgcacg
gtcatcgagcagttgcgcgcgcccggcaaggtgacctggccggaaggaccgcccgcgccg
aaggcgccgcagggcgtgctggcgggcaagacggtcgtgctgacgggcacgctgcccacg
atgggacgcgacgaggcgaaggagttgctggaagcggccggcgcgaaggtggccggctcg
gtgtcgaagaagaccgactacgtggtggcgggtgccgaagcgggcagcaagctcgcaaag
gccgaggaactcggcatccccgtgcttgacgaagatggtatgcgtaagctcctggagggg
cagacaacatga
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