Paralysiella testudinis: JQU52_05865
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Entry
JQU52_05865 CDS
T07686
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptes
Paralysiella testudinis
Pathway
ptes03030
DNA replication
ptes03410
Base excision repair
ptes03420
Nucleotide excision repair
ptes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JQU52_05865 (ligA)
03410 Base excision repair
JQU52_05865 (ligA)
03420 Nucleotide excision repair
JQU52_05865 (ligA)
03430 Mismatch repair
JQU52_05865 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptes03032
]
JQU52_05865 (ligA)
03400 DNA repair and recombination proteins [BR:
ptes03400
]
JQU52_05865 (ligA)
Enzymes [BR:
ptes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JQU52_05865 (ligA)
DNA replication proteins [BR:
ptes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JQU52_05865 (ligA)
DNA repair and recombination proteins [BR:
ptes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JQU52_05865 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JQU52_05865 (ligA)
MMR (mismatch excision repair)
DNA ligase
JQU52_05865 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JQU52_05865 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QRQ82898
UniProt:
A0A892ZKF5
LinkDB
All DBs
Position
1130403..1132823
Genome browser
AA seq
806 aa
AA seq
DB search
MNHDDDDIARRIHSLSAELNQHAHAYYTLDAPAIPDAEYDRLFRQLQDLEAQYPAFRQPD
SPTLRVGGAVLKGFAAVVHTVPMLSLSNAFSPPDEQGGFDHAEMWAFDARVRELLGGTAV
LYLAEPKFDGLAISLLYRDGLLVQAATRGDGSSGEDVTANVRTIANIPLRLAGVRLPELL
EVRGEVLMFKSDFVRLNRKQAGSGQKAFANPRNAAAGSLRQLDARITAKRRLHFFAYGIA
QLEGMTPPASHGAELDLLAALGFSIPPADMMCRHADMAAVLAFYQEMSKLRPELPFEIDG
MVVKVDSLAQQQTLGFVSRAPRWAIAHKFPAEEALTVVEAIDVQVGRTGAVTPVARLRPV
FVGGVTVTNATLHNEGEAQRKDVRVGDTVVVRRAGDVIPEVVAVVLEQRPMHTGATVENG
DLFADIDTLVPQYPPFRLPEACPVCGSGIEREDGGAVARCSGGMLCQAQRAQALIHFASR
KAMDIDGLGQRQIELLVAQNRVRHFADVYRLSLADLQAMKRQADAENNDEAVDDTAANHG
QPVKWAQNILAAIEASRQPPLARFLFALGIRHVGERTAKQLALAFGDLATVRRAPEPLLA
CLPDIGAIVAQSIAHFFRQPEQAQQVDELLAAGVVPQPQNPGLDLAALLSPPRWLARLPG
LRLSETRAQALWALAGENEAALLTDAALPPEWQQWREQPHHHTLLMEILAFVAELHPVAT
LQAASVSVPTAVAGKTFVLTGTLPDWSRDEAQQRIEAAGGKVSGSVSKKTDYVVAGEAAG
SKLAKAQTLGISVLNQVQLQQLLEQS
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacgatgatgatgatatcgcccgccgcatccacagcctcagtgccgagctgaac
cagcatgcccatgcgtattacacgctggatgcccctgcgattcccgatgccgaatacgac
cgcctgtttcggcaattacaggatttagaagcacaataccccgctttcaggcagccggac
agccccactttgcgcgtgggcggcgcggtgctcaaaggctttgccgccgtggtgcacacg
gtgccgatgttgtcgctgagcaatgctttttcaccgccggatgaacaaggcggctttgac
catgccgagatgtgggcgtttgatgcccgcgtgcgcgaactgcttggcggcactgccgtc
ctttatctggccgagccgaagttcgatggcttggccatcagcctgctgtaccgcgatggc
ctgctggtgcaggccgccacccgcggcgacggcagcagcggcgaagatgtgacggccaat
gtgcgcaccattgccaatattcccctgcgtttggcgggcgtaaggctgcctgaattgctg
gaagtgcgtggtgaggtgttgatgtttaagtctgattttgtccgtttaaaccggaagcag
gccggctcaggacaaaaagcctttgccaacccgcgcaatgccgctgcgggcagtttgcgc
cagctggatgcccgcatcaccgccaaacgacggctgcattttttcgcctacggcattgcc
caactagagggtatgacaccgccggccagccacggtgcggagctggatttactcgccgca
ctgggatttagcattcctcctgccgatatgatgtgccgtcatgcggatatggctgcggtg
ctggcgttttaccaagaaatgagcaaactgcgccccgagttaccgtttgaaattgacggc
atggtggtgaaggtggacagcttggcgcagcagcagacgctgggctttgtgtcgcgcgcg
ccgcgctgggcgattgcgcacaaattcccggccgaagaagcgcttactgtggtggaggcg
attgacgttcaggtggggcgcactggcgccgtcaccccggtggcgcgtttgcgaccggtg
tttgtgggcggggtaacggtcaccaacgccaccttacacaatgagggcgaagcgcaacgc
aaagacgtgcgcgtgggcgacacagtggtagtgcgccgcgccggtgatgtgattcccgaa
gtggtggcggtggtgttggagcagcgccccatgcacacgggggcaacagtcgaaaatggc
gacttgtttgccgatatcgacacgctggtgccgcaatatccgcctttcaggctgcctgaa
gcttgcccggtgtgtggcagcgggattgagcgcgaagacggcggtgcggtggcgcgttgc
agcggcggtatgttgtgccaagcacagcgggcgcaggcattgattcactttgcctcacgc
aaagcgatggacatcgacggccttggccagcggcaaattgagctattggtggcacaaaac
cgtgtgcgccattttgccgatgtataccggctcagcttggccgatttacaggcgatgaaa
cggcaggccgatgccgaaaacaacgacgaagcggtggatgacaccgcggccaatcatggc
cagccggtaaaatgggcgcagaatattctggccgccatcgaggccagccgccagccgccg
ttggcacgctttttgtttgccctaggcatccgccatgtgggcgaacgcaccgccaaacaa
ttggccttggcctttggcgacttggccaccgtgcgccgtgcgccagaaccactattggct
tgcctgccggacatcggcgccattgtggcgcaatcgattgcgcattttttcaggcagcct
gagcaagcgcagcaagtcgatgaattgctggccgccggggtggtgccgcagccgcaaaat
cccggcctggatttggccgcattgctcagcccgccgcgctggttggcacgcctgcccggc
ttgcgcctgagcgaaacccgcgcccaagctttgtgggcgctggccggtgaaaacgaagcc
gccttgctcaccgacgccgctttgccgccggaatggcagcaatggcgcgaacagccgcat
catcacaccttactgatggaaatactggcctttgtggccgagctgcaccctgtcgcaacc
cttcaggcagcctcggtatctgtgcccaccgccgtggcgggcaaaacctttgtgctcacc
ggcaccttgcccgattggagccgtgacgaagcgcagcagcgcatcgaagcggccggcggc
aaggtgagcggcagtgtgtcgaaaaaaaccgattatgtggtggcgggcgaagccgctggc
agtaaattagctaaagcccaaacactgggcatcagcgtattaaaccaagtgcaattacaa
caactattggagcaatcatga
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