Puntigrus tetrazona (Sumatra barb): 122330353
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Entry
122330353 CDS
T08985
Symbol
tdg.2
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122330353 (tdg.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122330353 (tdg.2)
Enzymes [BR:
ptet01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
122330353 (tdg.2)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
122330353 (tdg.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
122330353
NCBI-ProteinID:
XP_043083225
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Position
25:8931908..8936947
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AA seq
404 aa
AA seq
DB search
MAVRPPIKMEERQYSSLTAPMDYLQYWYQTNPQQYQAEQVPHYHQMVNATQYAERPVEDK
IMTDLSVHQDLYLDQPQQTHQLSAQPPALPTTPAKGKKRGRPPKGEGKERSEAEESAKKA
KRTLDRFNGMSVEEVMARKLPDVITHNLDMLIIGINPGLLSAYKGRHYPNPGNHFWKCLY
LSGLTEEQLNHMHDQTLPDRYGIGFTNMVERTTPGSKDLSNKEIREGGHQLLEKLQKYRP
LIAVFNGKCIYETFCKEIFGVKAKNLEFGLQPYKVPETETVCYLMPSSSPRCAQFPRAQD
KVHFFIKLKELRDQMKGVVKTQEIQETNYTFDVALAKEDAKRMAIKEEQHDPGYEETCAH
GSQQHPQQAFDVHHSTDTDQVSDNLWTMQPFADQIPDIRCSNSN
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcagtaagaccaccaattaagatggaagaaaggcagtattcatctctgacggcccct
atggattatcttcagtactggtatcaaaccaatcctcagcagtaccaggcggagcaggtg
cctcattaccaccagatggttaatgccactcagtatgccgagagacctgtggaggacaaa
atcatgactgatctttcagtgcatcaagatctgtatctggatcaacctcagcagactcat
caactctctgcgcaaccaccagcccttccgacgactccagctaaaggaaagaaaagggga
aggcctccaaaaggtgaagggaaggaaaggtcggaagctgaagagtctgccaagaaagca
aagaggactttggatcgcttcaatgggatgtcagtggaggaagtcatggctagaaagctg
ccagatgtcatcacacataatcttgacatgctgattatcggcatcaatcctggactgttg
tcagcttacaaaggaaggcattatccaaatcctgggaaccatttttggaagtgcttatat
ctttccggtctgaccgaagaacagctcaaccacatgcatgatcagacgcttcctgatcgg
tatggcattggtttcaccaatatggtggagaggactacacccgggagtaaagatctatca
aacaaagagatccgtgaaggtggccaccagcttttggaaaagctccagaagtacagaccg
ttaatcgctgtgttcaatgggaaatgtatttacgagacattttgcaaggagatctttgga
gtaaaggctaagaacttagagttcggattgcagccgtacaaagtgccagaaacggagacg
gtttgctatctgatgccatcatcaagcccgcgctgtgcccagtttcctcgcgctcaggac
aaagtgcacttcttcatcaagttaaaggagctcagggatcaaatgaagggagtggtgaag
actcaagagatccaagagacaaactacacatttgatgtggctctggctaaagaggatgcc
aaaagaatggcaatcaaagaagagcagcatgaccctggatatgaggagacctgcgctcat
ggatcacagcagcacccacagcaagcatttgatgtccatcattctacagatacagaccag
gtatcggacaacctgtggaccatgcagccgtttgcagaccagattccagacatcagatgt
agcaacagcaactga
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