Puntigrus tetrazona (Sumatra barb): 122341546
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Entry
122341546 CDS
T08985
Name
(RefSeq) LOW QUALITY PROTEIN: 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122341546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptet03041
]
122341546
Spliceosome [BR:
ptet03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122341546
Complex C
U5 SnRNP specific factors
122341546
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
122341546
NCBI-ProteinID:
XP_043090932
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Position
3:20094851..20113498
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AA seq
1019 aa
AA seq
DB search
MTSPTYDIRCSERGPRGAWFGNSTRDNFKTIIKSTRRKESHTELISMETDLYDEFXNYIG
PELDSDEDEEVDADDREADEADEEDDDEDQAEADEEDGGGMEVVLHEDKKYYPTAEEVYG
PEVETIVQEEDTQPLTEPIIKPVKMKRFTLMEQELPVTVYDMEFLADLMDSSELIRNVTL
CGHLHHGKTCFVDCLIEQTHPEIRKRDDSDLRYTDILFTEQERGVGIKSTPVTMVLPDSR
GKSYLFNIMDTPGHVNFSDEVTSAVRLSDGIVLFIDAAEGVMLNTERLIKHAVQEKLAIT
ICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDESLIVSPLLGNVCFASSQY
SICFTLGSFAKIYSDTYGDINYMEFAKRLWGDIYFNPKTRKFTKKAPNSNSQRSFVEFVL
EPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCNRFFGEFTGFVDMC
VXHIPSPQGGAKAKIEHSYTGGLDSDLGETMSECDPDGPLMCHTTKMYSTDDGVQFHAFG
RVLSGTLQAGQPVKVLGENYSLEDEEDSQICTVGRLWISVARYQIEVNRVPAGNWVLIEG
ATSLLLKXATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPKMLDGLRKVNKSY
PSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKC
FAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKVGRVLPDGKYDWDLLAPRSIW
AFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEPIRNVKFKILD
XVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARR
RGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVFHHWQIVPGDPLD
KSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQDVVLNYPM
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcaccaacgtacgacatacgttgctctgagagaggacctcgcggtgcatggttt
ggaaacagtacgcgggataactttaaaacaataataaaatccaccaggcgtaaagagtcg
cacacagagctcatcagcatggagacagatctttatgatgagttcngaaactatattgga
ccagagctggactctgatgaagatgaggaagtagacgcagatgaccgggaggctgatgag
gcagatgaggaggatgacgatgaagaccaggctgaggcggatgaggaggatggtggcggt
atggaggtggttctgcatgaggataaaaagtattatcctacagctgaggaagtttatggt
cctgaggtggagactatcgtccaagaagaagatacgcaaccactgacagagcccatcata
aaaccggtgaagatgaagcggtttactctgatggagcaagagcttcctgtcaccgtctac
gacatggagttccttgctgatttgatggacagctcagaactgatcagaaatgtcaccttg
tgtgggcacttacaccatggcaagacttgctttgtggactgcctcattgaacagacgcat
cctgaaatccgcaagagagatgactctgacttacgatacacagatatcctcttcacagag
caagagaggggagttggtatcaagagtacacctgtaaccatggttctgcctgactcccgg
ggcaaatcttacctttttaacatcatggacacgccaggtcatgtgaacttctctgatgag
gtgacatcagcagtcagactgtctgacggcattgtgctttttatcgatgctgccgagggg
gtgatgctaaacactgagcggctgattaagcatgcagtgcaggagaagttggccatcact
atctgtattaataaagtggatcgtctgatcgtggagctcaagctaccccctactgatgca
tactacaaactgcgccacatcgtggatgaggtcaacggcttgctgagcacgtactccacc
gatgagtctctgattgtctctcccctgttgggaaacgtgtgtttcgcttcctcacaatac
agcatctgcttcactctcggctcctttgccaaaatctattcagacacctacggtgacatc
aactacatggagtttgctaaaagactgtggggagacatttacttcaaccctaaaacgagg
aagtttacgaaaaaggcccccaacagcaattctcagcgaagctttgttgagttcgtacta
gagccgctgtacaagattctttcacaggtggtgggggatgtggacacatctctgcctcgt
gtgttggatgagctcggcattcatctgactaaagaggaattaaagctcaacatcagacct
cttctgcgccttgtctgcaaccgcttctttggagagtttacaggctttgtggacatgtgc
gtanaacacataccatctcctcagggaggtgccaaagctaagatagagcacagctacacg
ggcggactggactcggaccttggagagacgatgtctgagtgtgaccctgatggtccactg
atgtgtcacaccactaagatgtacagcacagatgacggcgtgcagttccacgcgttcggt
cgagtcctgagcgggaccctgcaggcgggccagcctgtgaaggttctaggagagaactac
agcctggaggacgaggaggactctcagatctgcactgtcggacgcctgtggatttctgtt
gctaggtatcagattgaagtgaatcgtgtccctgctggaaactgggtgttgatcgaaggt
gcgaccagcctattgttaaaanncgccacaatcacagaaccccgtggaaatgaagaggct
cagatcttcagaccactgaagtttaacacagcgtcggtgataaagatcgctgtagagcca
gtcaatccctcagaactgcccaaaatgttggatggactcagaaaagtcaacaaaagttat
ccatcacttacaacaaaggtggaggagtccggtgaacacgtgattcttggtacaggtgag
ctgtacctggactgtgtgatgcacgacctgcgcaagatgtactctgagattgacatcaag
gtggctgatccagtggtgaccttctgtgagactgtggtagagacgtcctctctgaagtgt
tttgctgaaacgcccaataaaaagaataagattaccatgattgcggagccgttggagaag
ggtctagctgaagacattgagaatgaggtggtgcagatcacgtggaacaggaaaaaagtt
gggagagttcttccagacgggaagtatgactgggatttgctggcgcctcgttctatttgg
gcctttggacctgacacaactgggcccaacattttagtagacgacactttgccctctgag
gtagataaagctcttctcggctcagtgaaggacagtattgtgcagggcttccagtgggga
acacgcgagggtcctttgtgtgatgaaccaatccgcaacgtgaagtttaagatcctggac
ngcgtgatcgcacaggaaccgctgcacagaggaggaggacaggtcatccctacagctcgc
agagtcgtctactctgccttcctgatggccacgcccaggctgatggagccctattacttt
gtggaggttcaggcccctgctgactgtgtttctgctgtgtacacggtgctggcacgcagg
agaggtcatgtgacgcaggatgcgccaatccctggctctcctctctacaccatcaaggct
ttcattcccgctattgactcgtttggctttgaaaccgatctccgcacacacacgcagggc
caggccttcgcgctcagtgtgttccaccactggcagattgttcccggtgatcctctggat
aagagcattgtgattcgtcctctagagcctcagccggcccctcatttggccagagagttt
atgatcaaaacccgcaggcgcaaaggtttgagcgaggacgtcagtatcagcaagttcttc
gatgaccctatgttgttggagctggccaaacaagacgtggtgctcaattacccgatgtga
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