Puntigrus tetrazona (Sumatra barb): 122342123
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Entry
122342123 CDS
T08985
Symbol
eftud2
Name
(RefSeq) LOW QUALITY PROTEIN: 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122342123 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptet03041
]
122342123 (eftud2)
Spliceosome [BR:
ptet03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122342123 (eftud2)
Complex C
U5 SnRNP specific factors
122342123 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
122342123
NCBI-ProteinID:
XP_043091851
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All DBs
Position
3:20185535..20195721
Genome browser
AA seq
1022 aa
AA seq
DB search
MTSPTYDIRCSERGPRGAWFGNSTRDNFKTIIKSPRRKESHTELISMETDLYDEFGNYIG
PELDSDEDEEVDADDREADEADEEDDDEDQAEADEEDGGGMEVVLHEDKKYYPTAEEVYG
PEVETIVQEEDTQPLTEPIIKPVKMKRFTLMEQELPVTVYDMEFLADLMDSSELIRNVTL
CGHLHHGKTCFVDCLIEQTHPEIRKRDDSDVSIYSRYTDILFTEQERGVGIKSTPVTMVL
PDSXGKSYLFNIMDTPGHVNFSDEVTSAVRLSDGIVLFIDAAEGVMLNTERLIKHAVQEK
LAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDESLIVSPXLGNVCFA
SSQYSICFTLGSFAKIYSDTYGDINYMEFAKRLWGDIYFNPKTRKFTEKAPNSNSQRSFV
EFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCNRFFGEFTGF
VDMCVQHIPSPQGGAKAKIEHSYTGGLDSDLGETMSECDPDGPLMCHTTKMYSTDDGVQF
HAFGRVLSGTLQAGQPVKVLGENYSLEDEEDSQICTVGRLWISVARYQIEVNRVPAGNWV
LIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPKMLDGLRKV
NKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETS
SLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAAR
SIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEPIRNVKFK
ILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVL
ARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFATSVFHHWQIVPGD
PLDKSIVIRPLEPQPAPHLAREFMIKTSRRKGLSEDVSISKFFDDPMLLELAKQDVVLNY
PM
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcaccaacgtacgacatacgttgctctgagagaggacctcgcggtgcatggttt
ggaaacagtacgcgggataactttaaaacaataataaaatcccccaggcgtaaagagtcg
cacacagagctcatcagcatggagacagatctttatgatgagttcggaaactatattgga
ccagagctggactctgatgaagatgaggaagtagacgcagatgaccgggaggctgatgag
gcagatgaggaggatgacgatgaagaccaggctgaggcggatgaggaggatggtggcggt
atggaggtggttctgcatgaggataaaaagtattatcctacagctgaggaagtttatggt
cctgaggtggagactatcgtccaagaagaagatacgcaaccactgacagagcccatcata
aaaccggtgaagatgaagcggtttactctgatggagcaagagcttcctgtcaccgtctac
gacatggagttccttgctgatttgatggacagctcagaactgatcagaaatgtcaccttg
tgtgggcacttacaccatggcaagacttgctttgtggactgcctcattgaacagacgcat
cctgaaatccgcaagagagatgactctgacgtgagtatatattcacgatacacagatatc
ctcttcacagagcaagagaggggagttggtatcaagagtacacctgtaaccatggttctg
cctgactccnngggcaaatcttacctttttaacatcatggacacgccaggtcatgtgaac
ttctctgatgaggtgacatcagcagtcagactgtctgacggcattgtgctttttatcgat
gctgccgagggggtgatgctaaacactgagcggctgattaagcatgcagtgcaggagaag
ttggccatcactatctgtattaataaagtggatcgtctgatcgtggagctcaagctaccc
cctactgatgcatactacaaactgcgccacatcgtggatgaggtcaacggcttgctgagc
acgtactccaccgatgagtctctgattgtctctcctnngttgggaaacgtgtgtttcgct
tcctcacaatacagcatctgcttcactctcggctcctttgccaaaatctattcagacacc
tacggtgacatcaactacatggagtttgctaaaagactgtggggagacatttacttcaac
cctaaaacgaggaagtttactgaaaaggcccccaacagcaattctcagcgaagctttgtt
gagttcgtactagagccgctgtacaagattctttcacaggtggtgggggatgtggacaca
tctctgcctcgtgtgttggatgagctcggcattcatctgactaaagaggaattaaagctc
aacatcagacctcttctgcgccttgtctgcaaccgcttctttggagagtttacaggcttt
gtggacatgtgcgtgcaacacataccatctcctcagggaggtgccaaagctaagatagag
cacagctacacgggcggactggactcggaccttggagagacgatgtctgagtgtgaccct
gatggtccactgatgtgtcacaccactaagatgtacagcacagatgacggcgtgcagttc
cacgcgttcggtcgagtcctgagcgggaccctgcaggcgggccagcctgtgaaggttcta
ggagagaactacagcctggaggacgaggaggactctcagatctgcactgtcggacgcctg
tggatttctgttgctaggtatcagattgaagtgaatcgtgtccctgctggaaactgggtg
ttgatcgaagggtgcgaccagcctattgttaaaacggccacaatcacagaaccccgtgga
aatgaagaggctcagatcttcagaccactgaagtttaacacagcgtcggtgataaagatc
gctgtagagccagtcaatccctcagaactgcccaaaatgttggatggactcagaaaagtc
aacaaaagttatccatcacttacaacaaaggtggaggagtccggtgaacacgtgattctt
ggtacaggtgagctgtacctggactgtgtgatgcacgacctgcgcaagatgtactctgag
attgacatcaaggtggctgatccagtggtgaccttctgtgagactgtggtagagacgtcc
tctctgaagtgttttgctgaaacgcccaataaaaagaataagattaccatgattgcggag
ccgttggagaagggtctagctgaagacattgagaatgaggtggtgcagatcacgtggaac
aggaaaaagttgggagagttcttccagacgaagtatgactgggatttgctggcggctcgt
tctatttgggcctttggacctgacacaactgggcccaacattttagtagacgacactttg
ccctctgaggtagataaagctcttctcggctcagtgaaggacagtattgtgcagggcttc
cagtggggaacacgcgagggtcctttgtgtgatgaaccaatccgcaacgtgaagtttaag
atcctggacgcggtgatcgcacaggaaccgctgcacagaggaggaggacaggtcatccct
acagctcgcagagtcgtctactctgccttcctgatggccacgcccaggctgatggagccc
tattactttgtggaggttcaggcccctgctgactgtgtttctgctgtgtacacggtgctg
gcacgcaggagaggtcatgtgacgcaggatgcgccaatccctggctctcctctctacacc
atcaaggctttcattcccgctattgactcgtttggctttgaaaccgatctccgcacacac
acgcagggccaggccttcgctaccagtgtgttccaccactggcagattgttcccggtgat
cctctggataagagcattgtgattcgtcctctagagcctcagccggcccctcatttggcc
agagagtttatgatcaaaaccagcaggcgcaaaggtttgagcgaggacgtcagtatcagc
aagttcttcgatgaccctatgttgttggagctggccaaacaagacgtggtgctcaattac
ccgatgtga
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integrated database retrieval system
