Puntigrus tetrazona (Sumatra barb): 122346807
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Entry
122346807 CDS
T08985
Symbol
smcr8b
Name
(RefSeq) LOW QUALITY PROTEIN: guanine nucleotide exchange protein smcr8b
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122346807 (smcr8b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptet04131
]
122346807 (smcr8b)
Membrane trafficking [BR:
ptet04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
122346807 (smcr8b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCR8_C
Folliculin
Motif
Other DBs
NCBI-GeneID:
122346807
NCBI-ProteinID:
XP_043097598
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All DBs
Position
1:6035257..6039844
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AA seq
993 aa
AA seq
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MISSPDLVAFTKETDFSEIVKDPSVLPEELSVPLYPYAGVTTPWSKTCGANFTKDFILLS
EFSEQVGPQPLLTVPPEXKACGTFDLNHFSLRIMSVDYQTSLTGPASCGSLKLNFVEDSK
VVLGDSREGAFAYVHHLTLYDLEARGFVRPLCLAYVSSDEHKIIQQFQQISTEFSKVSEC
LKTGNRKNFANELEIKLRDLEYTRVAVLREIKSELNDASVVCTSEREHMLNGMPTLDVKL
KEKSHKDEVELQEKDRCEISRKAEVDCEKGNRSCITHDRDEQFEGRRKNKQDKGSYPMPN
KGDELASVEKSIQEYKSLLKQVTSYRTRKLRDSEYSPYEPDDLPHSFEFDLDDLRHGQLA
GQELECNVFPCTDTPSHSLKLMNSISSCRFDKRLKTLEELCDDYFHQQALQQLNCIERTF
RGDACHLYSQQLCRNLLHNLKFTNFLFEDQCDLEDDVGLQIGIAGQHSVRQPSFLPAPSI
LSEPVSLESYVSCVEMVPIKLDLGGSSQSPGVPGSVNTPAEDNRPLTSSAVETEMENEGV
VSASDCQENVGMCVSALMKTSISSGDSIEVLGTEKSFRSQGSNILIDTALQKPPLLSTTV
VLEGLKQGRVITRRTCSEDSIEVLCTTESILPEDLRASYPCAIDEESTEQETDEKDASQN
QKDKQVECVYSAGNVPRGACIEEPQDFYPAVTLTPPDCPTTLSLGRSISQDVCHASELIP
LSLLDEPGRIAPDDLSDCFSYRSTTASTTSECTFLTCLPKNKREGGTRRRRGRVGRAALQ
FLRQYPFAVHAVFSLLSGQTLVVLGSEEAAVRRMVTALSVYMPHQSRYRDGIQPWTSTPL
QLTDLLNWKLIGFNRMCCYTYTNMPHCLGHYSRYLSILDVDQKTLRCSSYSGTLLNTLVE
PRSHFKRGNTYFMFAQSVQSKLATTAFLLTFSHGFHTPRRPRECTWTQCFQSEIHRDDKR
ILNYLSELIKLHFMEVPPNVLRFSYNTNSIFKL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgattagttctccagatttggtcgctttcactaaagaaacagatttcagtgaaatagta
aaagacccatcagtacttccagaagaactgtctgttcccttgtacccctacgctggggtc
accaccccatggtccaagacttgtggagctaattttacaaaggattttatccttttatca
gagttttcggagcaagttgggcctcagcctttgcttacggttcctcctgaanacaaggca
tgtgggacatttgatttgaaccacttctcccttcggataatgtcagtggactatcagacc
tcgctcacaggcccagccagttgtggctctttaaaactgaactttgtagaagactcaaag
gtagttttaggggactccagagaaggagcgtttgcgtatgtgcaccatcttactctctat
gacctggaggctcgagggtttgtgcgacctctctgccttgcctatgtgtcatctgatgag
cataaaatcatacagcaattccagcagatttccacagagttctccaaggtctctgaatgt
ctaaaaacggggaacaggaagaactttgctaatgaactggagataaaactcagagatttg
gagtacacaagagtcgcggtacttagagaaatcaaaagcgagttgaatgatgcatctgta
gtgtgcaccagtgaaagggagcacatgctgaatggtatgcctacattagatgtgaaactg
aaagaaaaatctcacaaagatgaagtggaattacaagagaaagacagatgtgagatttca
agaaaggcagaagtagactgtgaaaaggggaataggtcatgtataacgcatgatagagat
gaacagttcgaagggagaaggaaaaacaagcaggataaaggatcttacccaatgcctaat
aaaggtgatgaactggccagtgttgaaaaatccattcaggaatacaaaagccttctaaag
caggtcacttcctaccgaaccaggaagcttagagactctgaatactctccttatgaaccg
gatgacctccctcattcctttgagtttgatctggatgatttaaggcacggtcagcttgct
gggcaggagttggaatgcaatgtttttccttgcacagacacaccctcacattctttgaag
ctgatgaactcaatttcatcttgccgatttgacaagcgtctgaaaactctcgaggagttg
tgtgatgactacttccaccaacaggctctacagcaactgaactgcattgagaggactttc
agaggagacgcctgccatctctattcacaacaactctgccgcaatcttctccacaacctc
aaatttaccaatttcttatttgaagatcaatgtgacttggaagatgacgtggggttgcag
attggaatagctggtcaacattcagtccgacaaccttcctttcttcctgcaccatcaatt
ctaagtgaacctgtcagtcttgagtcgtatgtctcctgcgttgaaatggtgccaatcaaa
ctagacttgggcggatccagccaatctccaggtgtacctggttcagtaaataccccagcc
gaagataacagaccactaacatcctccgcagtagagactgaaatggaaaatgagggcgta
gtttcagcttctgattgccaagaaaatgtgggaatgtgtgtttcagctttgatgaagacc
agtattagtagtggagatagtattgaggtcttaggaacagagaagtccttcagatcacag
ggttcaaacatactaatagatacagcactacaaaaacctccacttttgtccactacagtc
gtgctggaaggtctaaagcaagggagggtaattaccagacggacttgcagtgaagacagc
attgaggtgctttgcacaacagaatcaatcctaccagaagacctgcgtgcgtcataccct
tgcgcaattgatgaggaaagtacagagcaagagactgatgagaaagacgcatctcaaaac
caaaaggacaaacaagttgagtgcgtttacagtgcgggaaatgttcctcgaggtgcctgt
atagaggagccacaagatttttatcctgctgtcaccttaaccccacctgactgtcctacg
actttgtcccttggtcggtcaatctcccaagatgtttgccatgcttcagaattaatcccc
ctctcattgttagatgagcctggtcggatagcacctgatgacttgtcagactgtttcagc
tatcggagcaccactgcctctacaacctccgaatgcacttttctaacttgtcttccaaag
aataaaagagaaggtgggactagacggagacgtggaagagtagggcgagcagcgttgcag
tttttacgacagtatccctttgcagtgcatgcagtgtttagccttctgagtggccaaact
ttggtagtactaggcagcgaggaggctgcagtgagacgaatggttacagcactctccgtg
tatatgccacatcagagtagatacagagacggcattcaaccatggacttcaacgccactg
caactaactgacctgctcaactggaaacttattggctttaacaggatgtgctgttacact
tacacaaatatgcctcactgcctgggccattacagccgatacctcagcattctagatgtg
gatcaaaagacactgcgctgctcatcctacagtggtactcttctcaacacgctggtggaa
ccaaggagccactttaaacgtggaaacacctacttcatgtttgctcaaagtgtgcaaagc
aagcttgccaccacagcattccttttaacattttcacatggtttccatacacccagaagg
cctcgggaatgtacatggacgcaatgctttcaatctgaaattcacagagatgataagaga
atcctaaactatttatctgaactcatcaaactgcacttcatggaggttccacccaatgtc
cttagatttagctacaacacaaactctattttcaaactctga
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