Puntigrus tetrazona (Sumatra barb): 122347874
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Entry
122347874 CDS
T08985
Symbol
smchd1
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ptet03036
]
122347874 (smchd1)
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122347874 (smchd1)
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
122347874 (smchd1)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
122347874 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
ARHGEF5_35
Uds1
PEARLI-4
Motif
Other DBs
NCBI-GeneID:
122347874
NCBI-ProteinID:
XP_043099073
LinkDB
All DBs
Position
7:39369608..39406736
Genome browser
AA seq
1982 aa
AA seq
DB search
MCDEAKMTETGAERKRGAQPRRSVCVYDCRPESSPAPPRTLDITEADYSGFLRALRQEFS
LSANETFVISTTDRGEIDAEHYKDLVDGKTLHLFESANQKLNAATEERIEFLPHYHTLVQ
CGMYEYYASEGQKALPYAFAELIDNALSATAKNTGTRTIEIRLLFDESQGGPAVVVMDNG
CGMTSKQLNNWAVYRLSKFIRENSIKSEESGYVRPDPVPRSLNSDISYFGVGGKQAVFYI
GQSVRMISKPAGSPDVHEFVMSKEDFERKETNKEDIYSGFIRNRKPGDYSHVNESVEHFL
RSVVVEEEGKESFTAVVITRVQQEHVTFLKHNFNLWTRELAHTYHYYIHGVNGNDWKKPT
NDQVSNIDIQISLFERSPRLPRVINLKQVDNDMQTLYINSSVSTFEFKATGSGDSLVEGL
IRYHPFLYDQETYPVDPYALGPKEDEDEDCVILNSEARGKRPIFECFWNGRLIPYTTVSE
FEWCARPKKVGALPVECYNRISGVLFANDRFQVSTNKLTFMDLELQLRDNNTIFTRVHNG
QELRVKIEREFTNWLRECNERHDKQVMFQGFLGSGTRTDVAPKRLQSPWAQFHTIKWDGR
VYKKGQYVKSVKTNPVFVGSIVKFLLYGEHEGDVYATGGYVQVALEPKELYDELKIIPIS
KIDRLAADATIKKKIEDELAKLPDQLRMTWPEGNAWAENDARPAGTPMGPIKVEILNKKG
DSMSRLPVAGSTKKLLIELKVIWHSPKGDVQTNSHIGVHSSKWEYWFKPMENFSKLGKYT
LHLQTMLSESSSSAWAGKTLPNHTLTFSIKEGEAASFVLGAISSPVHVGXSFGIPLDFRD
DFDYPTQPPSGIKPQLECSSLQLSYEGIAFGTTCVIKNVRAKGKISHQSKRYTVKVLIPG
LKQDSQTLQIALQPGPPHALAVFPEDGVLSVENRTPANFRVEVHDEHQNVTSQPKLTVRC
QLLGAPDLPVDVVDCSNTGCGLLLTKPLLLKSVNAEQILTAKFNIPNHRSVPCVERQLRV
LPSSRISRLEVYRQEEGSDDVMVLQNSECIDWTAGDTLGNLRFKLYDEGNRLVSLQPKLA
SKIKVNWSADINAEELSQGKLPPLCVPSKAQREHFYNVSLHDQHTVSFSFIIVPRPDEPE
RLRVSLSESVVKMGEILSRNIYVDVVDQYGNKTDCLNADNVNTLSVSADGLDQSALAVEW
QAGSGRFSVCGVRIVGRSPGPRELCFKYKDMKEFVQIQVSAGPPVQIKLLEKPEMPVQVV
NGQGLDAPLVMQLCDEWGNPSPDQRIEIMMNALTPQLKIKSLISSQPVDSEGKACFVLEA
ISGPKGLHQVAFPGSFGRNGIPGPVVKLNLIPDPNKPVELSVKYDSAAALRAGDIFPVFT
VMAISEEGTPVRNICPANLSMLLWKDTASGSFPPSSASSLKCSKRTDADMDDCFCFRDKQ
IPDLAGQYVVQFVLALDKTKHLWSKQTPLNVVANKAVKLAPEAPSSTPVVSNGGVRANRT
LLDRLHLKIMDQYSNPAGEGLDGKVIVTVKDTEDMVLPLFENEDTSVSYSLTNGETFITD
LALLENSPGVDGAEYILKFSLEIHDNTVSIAPYVLPFRFCNDAEHQKVIVSLSNKKDRLS
RTVSMYREIFDTNKQLTSELESQVRDATHKLNELKPELLKYNLEVSELTTVSAIEAVIND
KKAILTQMESQPLRKCDISDPFKSSPQVLGKVGHLALVEDDDAAKVISWHLLGDMDCVVT
ETTSAAKKIYDDTQGRQQVLPLETVFCRPNDRPLPHIRNGKPLFCPVGNPVFVKDMLIFP
EHAESCNKVFSTLLGDTILIDDLDSANHYRRGVVQNKMQCPTLLTRQGERIRSNGKFGGL
QNKAPSIERLRGQVFGAPFPKEYKHTRRQIDLLQQCCVAMQKASQVQSEYSGHLQYLQSP
EMKRKRQDLQQQEQELKELEKTLASTPTQLYSVRVKRSLEPEMPEPSTPSKRSRRKTRKL
DS
NT seq
5949 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgacgaagcgaagatgaccgagaccggagcggagagaaagcggggcgcgcagccg
cggaggtcggtgtgtgtgtatgactgcagaccggagagcagccccgcgcctccgcggacc
ctcgacatcaccgaggcggactacagcggcttcctgcgggctctgagacaggagttttcg
ctgtcggcaaatgagacttttgttatcagcacgacggaccgaggagagatcgacgcagaa
cattacaaggatctggtcgacgggaaaaccttgcacctgttcgagtcagcgaatcagaag
ctgaatgcggcgaccgaagagcgcatcgagtttctgcctcactaccataccctggtgcag
tgtggcatgtacgagtactacgccagcgagggacagaaggcgctgccctacgccttcgct
gagctcatcgataacgctctgtcagccaccgcaaaaaacacaggaaccaggacgattgag
atcagactgctgtttgatgagtctcagggaggacccgctgttgtggtgatggataacgga
tgtggaatgacttctaaacagctgaacaactgggccgtctaccgtctgtccaagttcata
cgagaaaacagcatcaagagtgaagaaagcggttacgtgcgtccggatccagttccacgc
agtctgaacagtgacatctcgtacttcggagtcggaggcaaacaggcggtgttttacatc
ggccagtctgtcagaatgatcagtaaacccgcaggctctccggatgtccacgagttcgtc
atgtctaaagaagacttcgagcgcaaggagacgaacaaggaagacatttactcgggcttc
attagaaacaggaagcctggcgattactcgcacgtgaatgagagcgtggagcactttctg
cggtccgttgtggtcgaagaagaaggaaaggagagttttactgcagttgttatcactcga
gtccaacaggagcacgtcaccttcctgaaacacaacttcaatctgtggaccagagagctg
gcgcatacttaccattactacatacatggcgttaatggaaacgactggaaaaaaccaaca
aatgaccaggtctccaacattgacattcagatcagtttgtttgagcgctctcctcgactt
ccccgtgtgataaatctgaagcaggtggataatgacatgcagactctgtatatcaactct
agcgtttctacttttgagttcaaagccaccggcagcggagattccttggtggagggtctg
atccgttatcacccgttcctctacgaccaagaaacatacccagtggatccctatgcatta
ggtcctaaggaggatgaggatgaagattgtgtaatcttgaactctgaagctcgaggcaaa
cggccgatctttgagtgcttctggaacgggcggctcattccctacaccactgtctcagag
ttcgagtggtgtgcaaggccgaagaaagtaggtgcattgccagtggagtgttataaccgg
atatcaggagttcttttcgccaacgaccggttccaagtcagtaccaacaaactgaccttc
atggacctggagcttcagctccgtgacaacaacaccatttttaccagagtgcacaatggt
caggagctgcgagtgaaaatagagagggagtttactaactggttaagagaatgtaatgag
cgtcacgataaacaggtgatgtttcagggattcctgggttcggggacacgtacagatgtc
gccccaaaaaggcttcagtccccctgggctcagtttcacaccattaagtgggacggcagg
gtttacaagaaaggacaatatgtgaagtcggtgaaaacaaaccccgtctttgtcggctct
atagtgaagtttttgctgtacggagagcatgaaggagacgtgtacgccaccggaggatat
gtccaggttgcactggaaccgaaggagttgtatgatgagctgaagatcattcccatctct
aagatcgacaggctggccgccgatgcaaccattaaaaagaaaatcgaggatgagctcgcg
aaacttcctgatcagctgaggatgacgtggcctgagggaaacgcctgggctgagaatgac
gctcgcccggccggcacacccatgggcccaattaaagtggagattttgaacaaaaaagga
gactcgatgtctcggctgcccgtggctggctccactaagaagctgctgattgagctgaaa
gtcatctggcactctcctaaaggagacgtccagacgaactcccacattggagttcattcg
tccaagtgggagtactggttcaagcccatggagaacttcagtaagctcgggaagtacacg
ctgcacctgcagaccatgctgagtgagagctcgtccagcgcatgggcgggaaaaaccctg
cccaaccacacgctcacgttctccattaaagaaggtgaagcggcatcttttgttcttggc
gccatttcctctcctgtccatgtcgggnnttccttcggtattcctctagattttagggat
gactttgattaccccacccagccgcccagcggcatcaaaccccagctggagtgcagttca
ctacagctgagttatgagggaatcgcgtttgggaccacttgtgtcatcaaaaatgtgagg
gccaagggaaagatcagtcaccaaagcaagaggtacacagtgaaggtgctcatcccagga
ctgaagcaggacagccagactctacaaattgctctgcagcctggccctccgcacgctctc
gcggtgtttccagaagatggcgtgctctccgttgagaatcgaactccggctaatttcaga
gttgaggttcacgatgagcaccagaacgtcacctctcagcctaaactcaccgtccgctgc
cagctgctgggagctcctgatttgcccgtggatgtggtggactgcagtaacaccggctgt
ggactcctgctgactaaaccacttctactgaagagcgtaaacgccgagcagatccttact
gctaagttcaacattcctaaccacaggagcgtgccgtgcgtggaacgacagctccgggtc
ttgcccagctcacgaatatcccgtttggaggtctacagacaggaagagggctctgatgat
gtcatggtgctgcagaactccgagtgcattgattggacggcaggagacaccctaggaaac
ctacgcttcaaactgtatgatgagggcaacagactggtttcccttcagccaaaactcgcc
agcaagattaaggtgaattggagcgcagatataaacgcagaagagctttctcagggaaaa
cttcctcctttatgtgtcccgtctaaagcgcagagagagcatttctacaacgtgtctctc
cacgaccagcacacagtcagcttttccttcatcatcgtgcctcgtccagatgagcccgag
cgtctgcgggtcagtctcagcgagtcggtggtgaaaatgggagagattctgtccagaaac
atatatgttgatgtcgttgatcagtacgggaataaaacggactgcctgaacgcagataat
gtgaacactctgagcgtgtctgctgatggtctggatcaatcagctctggccgtcgagtgg
caggccggcagtggacggttttctgtatgcggggtgcggatcgtgggacgatctcctggc
ccgagagagttgtgctttaagtacaaggacatgaaggagttcgtgcaaatccaagtctcg
gcgggacctccggtgcagataaagctgctggagaagccggagatgcctgttcaggtggtg
aacggccagggcttggacgctcctctggtcatgcagctgtgtgacgaatggggaaatcct
tcaccagaccagaggattgaaatcatgatgaatgctctgacgccacagttgaagataaag
tctttgatatcatctcagcctgtggattcagaaggaaaagcttgcttcgtattagaagct
ataagtggtccaaaagggctgcatcaggtggcgtttccggggtctttcggcaggaacggg
attcccggacctgtcgtaaaactaaacctgatccctgaccccaacaaacctgtcgaactg
tctgttaaatacgacagcgctgctgctttacgagcaggcgacatcttcccagtgtttaca
gtgatggcgatttctgaagaaggcacaccggtgagaaacatctgcccggcgaacctctcg
atgctgctgtggaaggacacggcatcgggctcctttccaccttcatccgcctcttctctg
aagtgcagcaaacgcacagacgcagatatggacgactgcttctgcttcagggacaagcag
attccagatcttgcgggacagtacgtcgtccagttcgtgttggctttggacaagaccaaa
cacctgtggagcaagcagactccactaaatgttgttgccaataaagcggtgaaactagcc
cccgaggctccatcttcaacccctgttgtgtccaatggcggcgttcgggccaatcgcaca
cttctggaccgcttgcatctgaagatcatggaccaatacagtaaccctgctggtgagggt
ttagatggaaaagtgattgttacagtgaaagacacagaagacatggtgcttcctttgttt
gagaatgaagatacaagtgtgtcttacagcctcactaacggggagactttcattaccgat
ttggcccttttggagaacagtcctggtgtggatggagccgagtacatccttaagttcagt
cttgagattcacgacaacactgttagcattgctccatatgtcctgcctttcagattctgc
aacgatgcagagcatcagaaagtcattgtgagtctcagtaacaagaaagatcgcctttcc
cgaaccgtttcgatgtaccgggaaatttttgataccaataaacaactaacctctgaactg
gaatctcaggtgcgagatgcgacccacaaattaaacgagctcaaaccggagctcctgaaa
tataacttggaggtctcagaactaaccaccgtgtccgcaatagaggccgttataaatgac
aagaaagcgattttaacccaaatggagagtcagcctctgaggaaatgtgacatttctgac
cctttcaaaagcagcccgcaggtcctgggcaaggtgggtcacctggcgctggtggaggat
gacgatgcagcgaaggtgatctcttggcatcttctgggtgatatggactgtgtggtgacc
gaaacgacgtccgccgccaagaagatctacgatgacacacaaggacgacaacaagtcctt
cccctcgagacggtcttctgcagacccaatgataggcctctgcctcacatcaggaatggc
aaacctctcttctgtcccgtcggtaatcccgtgttcgttaaagacatgctcattttcccc
gagcacgcagaaagctgcaataaagttttttcaactctgcttggagacaccatactaatt
gatgatctggattctgccaatcattatcgtcgaggggttgttcagaataagatgcagtgt
cccacgctcttaacgcgtcagggagagcggatccgcagcaacgggaaattcgggggtctc
cagaacaaggctccgtcgattgagagacttcgagggcaagtgtttggagcgccgtttccc
aaagagtacaagcacacacgccgtcagatagacttactgcagcagtgctgtgttgcgatg
cagaaggcctctcaggtccagtctgagtatagcggtcatttgcagtatttgcagagtcct
gagatgaaacggaaacgacaagacctccagcagcaggagcaagagttaaaggaacttgag
aaaacccttgccagcactcccacacagctgtactctgtaagagtgaaaaggagccttgag
cctgaaatgcctgaaccctcgaccccttctaaaagatcccgccgcaaaacacgcaaactg
gattcatga
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