Puntigrus tetrazona (Sumatra barb): 122350853
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Entry
122350853 CDS
T08985
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122350853 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptet03000
]
122350853 (kdm2ba)
04121 Ubiquitin system [BR:
ptet04121
]
122350853 (kdm2ba)
03036 Chromosome and associated proteins [BR:
ptet03036
]
122350853 (kdm2ba)
Enzymes [BR:
ptet01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
122350853 (kdm2ba)
Transcription factors [BR:
ptet03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
122350853 (kdm2ba)
Ubiquitin system [BR:
ptet04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122350853 (kdm2ba)
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
122350853 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
122350853 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
LRR_At1g61320_AtMIF1
Rubredoxin
Motif
Other DBs
NCBI-GeneID:
122350853
NCBI-ProteinID:
XP_043103537
LinkDB
All DBs
Position
8:complement(18333953..18349705)
Genome browser
AA seq
867 aa
AA seq
DB search
MAMSLSADDEDYDSDTAEQQRLPNRPKPKMAASTVTTPAATSSSSTATAVKLPSNRTSSG
ARRRRTRCRKCEACVRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVC
GEAGKEDTLDDEDEKFNAMLMECSICNEIVHPNCLKVKDAAGVVNDELPNCWECPKCNYA
GKTGKACKQKRGPGFKYASNLPGSLLREQKAGRDGREEGEQTSTGASSIKRKSEREETPR
LKTEDLPSRLPPLLSPSGLPRPRSEVPNFLRKKRKLFDDDEEEEEASAKKKLKKIWRPEE
PLLPKLSHMKMEEEEENSDEDEEKRDPPRRSFKKDYSTVRKEEEHEEERREERDPPFRSL
NEFNTLRKEEDLDEEKEDDDEEEEDDNNGKRGRDSSPALKNISLSLESDASRCSSPRAGP
SSEGSETQEKAPRARAKRHRRKPPNRQLSAELSKQLNMEIRRTEHSLANENQQPLKSEPE
DSENEEPKRGLRNGTAGNGGGGGGVERGAGGEGGGERPHLRAREMNGTSWELRHFYPPQI
TPLGLNRSSPTVRPLPARSPPKCVQMERHVIRPPPICPPPDRLPLADGRNHIAPREAWLA
IFSHLSHRELCVCMRVCRTWNRWCCDKRLWTHIDLKRCKSITPLMLSGIIRRQPITLDLS
WTNISKKQLSWLINRLPGMRVLLLSGCSWVAVSALCTSSCPLLRTLDLQWVEGLKDPQMR
DLLSPPTDNRPGQMDTRSKLRNVTDLRLAGLDVTDSSLRLIIKNMPVLSRLDLSYCNHIN
DQSVNLLTAAGTTTRDSLTDVNLSVCNRVTDQSLSYFKRCGSICRIDLRFCKQVSRQACE
RFIAEMSVIVPFQLQEDKLLQKLHGTP
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atggccatgtcactgagtgccgacgatgaggattacgactcggacacagccgaacagcaa
cggctacccaacagacccaagcccaaaatggctgcatcaacagttactactccggcagcg
acctcttcttcatccactgcaactgcagtcaagttgccgtccaatcgaacctcctctgga
gctcgccgtagacgcacacgatgtcgaaaatgcgaggcatgtgtgcggacagaatgtgga
gagtgtcacttctgcaaggacatgaagaagtttggaggacctggtcgaatgaaacagtct
tgcattatgagacagtgtatagcgcctgtgttaccacatacagcagtatgtgtagtgtgc
ggagaagctggtaaagaagacacacttgatgatgaagatgaaaaatttaatgccatgctc
atggagtgctccatctgcaacgagattgtccacccaaactgcctcaaggtgaaggatgca
gctggggtggtaaatgatgagcttcctaactgctgggaatgtccaaaatgcaattatgct
ggaaagactggaaaagcctgcaagcaaaaacggggcccaggctttaaatacgcatccaac
ctgccaggctccctgctgagggagcagaaagcaggacgcgacggaagagaggaaggggaa
cagacatccacaggtgcttcatccattaagaggaagagtgagagggaggaaactcccaga
ctgaagaccgaagatttaccttctcgtcttcccccactcttgagccctagtggcctgcca
agaccacgatctgaagtgcccaacttcttgaggaaaaagagaaagttatttgatgatgat
gaagaagaagaggaggctagtgctaaaaagaagctgaagaaaatctggaggcctgaagag
cctttgcttcccaaactatctcacatgaaaatggaagaggaggaagagaactcggatgag
gatgaagagaagcgagatcctccccgtcgttcatttaagaaagactacagcaccgtaaga
aaagaggaagagcatgaggaagagaggagggaggagagagatccacctttccgatcccta
aacgagttcaacacactccggaaagaggaagatctagatgaagaaaaggaggatgatgat
gaggaagaggaggatgacaataatggcaaacgaggcagggacagcagccctgctctgaag
aacatctccttatcgcttgagagtgatgcttcacggtgcagctccccaagagcagggcca
agcagcgaaggtagtgagactcaagagaaggcaccacgtgctcgagcaaaacgacaccgg
cgcaaaccccctaaccgccagctcagcgcagaactcagcaagcagctcaacatggagatc
cgtcgcactgagcattcactggccaatgagaaccagcagccactcaagagtgaacccgag
gacagcgagaacgaggaaccgaagagaggcctccggaacgggactgcagggaacggagga
ggaggtggaggagtagaaagaggagcaggtggggagggaggaggggagcggccgcactta
cgagcgagggagatgaacgggacatcttgggagctgcggcacttttaccctcctcagatt
accccacttggcttgaaccgcagttcacctacagtcagaccacttccggcacgttctcct
cccaagtgtgttcagatggagcgccatgtgatccgaccacctccaatctgccctccacct
gataggctaccactagctgatggacgcaatcacatcgctcccagagaagcttggttggct
attttcagtcacctgagccatcgtgaactctgcgtgtgcatgcgagtgtgccggacatgg
aatcgctggtgctgtgacaagagattatggacccatatcgatttgaagcgttgtaagtcc
atcactccgcttatgctaagtgggataattcgcagacagcccatcactttggatctaagc
tggaccaacatctccaagaagcaattaagctggcttattaaccgattaccaggaatgagg
gtgcttctcctatcaggttgttcatgggtggccgtttcagctctctgcacgtccagctgt
cctctgctgcgtactctagacctacaatgggtggaggggctcaaagatccccagatgaga
gacctgctatctcctcccactgacaacagaccaggtcagatggacacacgcagcaaactt
cgaaatgttactgacctgcgtctggctggtttggacgtcacggacagctctctgcgtctc
atcattaaaaatatgcctgtactctcccgtttggacttgagttattgcaaccatatcaat
gaccagtcagtaaacctgctgactgctgcggggactaccactagagactccttaactgat
gtcaacctttctgtgtgtaacagggtcactgatcagtcgctgagctacttcaaacgctgc
ggaagcatctgccgcattgacctgcgtttttgcaagcaggtgagccgacaggcgtgcgag
cgcttcattgctgagatgtcggtcatcgttcccttccaactgcaagaggataaactgctc
caaaaacttcacggcaccccctag
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