Puntigrus tetrazona (Sumatra barb): 122355873
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Entry
122355873 CDS
T08985
Symbol
pcdh15b
Name
(RefSeq) protocadherin-15b isoform X1
KO
K16500
protocadherin-15
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
122355873 (pcdh15b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ptet03037
]
122355873 (pcdh15b)
04515 Cell adhesion molecules [BR:
ptet04515
]
122355873 (pcdh15b)
Cilium and associated proteins [BR:
ptet03037
]
Primary cilia and associated proteins
USH complex and associated proteins
122355873 (pcdh15b)
Cell adhesion molecules [BR:
ptet04515
]
Cadherins
Protocadherins
122355873 (pcdh15b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Ig_CLSTN
Ig_Cad99C_N
CDH23_a-b
Big_9
RibLong
Motif
Other DBs
NCBI-GeneID:
122355873
NCBI-ProteinID:
XP_043110398
LinkDB
All DBs
Position
12:complement(1217427..1374084)
Genome browser
AA seq
1725 aa
AA seq
DB search
MRQRSWLFKWLGIGIGVLLLTAASYSQDSDDWQYEECKLSRTGPPATIVAIDEESPNGTL
LVENMQINGRAEDPDRTISLSLRDNYDYWVILDPVKQRLYLNSTGRVLDRDPPSYIQSIV
VQVQCTNELVGTVILHEVRIVVRDRNDNTPRFQQPRYYVAINELTPVGTTVFSGFTGNNG
AVDIDDGPNGQIEYTIQYNPKDPTTNRTFDIPLTLSGSVVLRERLNYEEITRYLVIIQAN
DRAPNPKDRLTATTTLTVDVLDGDDLGPMFLPCSLVHNTRDCKPLTYRASILELTDPSRV
NPVNVTPPIQAVDQDRNIQPPSDRPGILYSILIGKPASYAEYFSLNQTTAELQLLKPISR
EKYQHLDLVIKAEQDNGHPLPAFANLHIEVLDENNQAPYFQVATYHGFISESAPLGTTIS
SSANLSTPLAIIALDNDIEETKDPMVRVSLDNYNSIFAVTPSGISRYLTLLRPVDHEEQP
SYAFTMTASDGVQESSPVTVNITVIDANDNTPTFSNVSYSVNVYTDMQPGDTILQLTAVD
ADEGPNGLVSYKILAGDQGHFTVNDYTGKITVLPGVNLTVGRSYALTVRASDNAPASQRR
SSITTVYIEVLPPNNQSPPRFPQLLYSLEVSEAMRTGATLLNIQATDRERDPITYTVLRG
DPNNVFEVSQTSGLLLLAKTLDREITDHYTLTVTASDGKPDGTSTATVNIAVTDVNDNDP
EFDPLLPLNLTVQEEEANAFVGQVKATDLDLGVNGQIRYRLVSHTDLFRISTDGSIFTAV
PLDREERAQYDLVVQASDGAKDPRRTTVTLSIKVLDVDDNSPAFSQTAYYVTLPENNPVG
MIILNISALDPDLDANVTYRIRTKEARELFALNPLTGELRVLQSLDFEKLLPNRTTWNFV
VEAVDGGSGKMPPGLASVTITVLDMNDFPPVFSQMLYRGMVAPNAIKGTTVTTVHAEDLD
PPGTAASRVNYKVDLEQFPYSTSIFDVEENSGNVLTRVNLNEEPNTKFSLAVIAYDDGEP
VKFNKTLVEITVLQPSIIPVFTQEEYRFSPVSENAPVGTVAGVILAAAINQTIVYSIIEG
NESGEFVVNNITGVISTAKPLDYESNSSYVLRVEADSMRVVSSNLRAPSKSNTAKVFIDV
QDENDHPPEFTKPFYLGGVAEDARTFTSVLQVQAVDKDTGNYSAMLYRLIIPPTTDGKDG
FVIEPFTGVIKTAIMYRNMRRSYFRFDVVATDDYGEGLSSSAQVVVSVVNQLDMQVVVSN
VPPTVVEQNKDRLIGILERYVQDQIPGAKVVVESIGPRRFGEGYEQEDYSKSDLMIYAID
PLTNRALSRQELFKFLDGKLLDINKEFQPYLGRGGRILEIRTPDVVESVKKAVQSVGYTE
GALLALAVIIIMCCIPAILIVIITYRQFKERQAECAKTARIQMALPTGKSGGAATNNLYE
ELGDSTMRGYGHQEQQQLLRPSLLRPEELSMESGIDPGQDYYTQDYYNYDHGYDLPQYGS
RRKLISPTGMYDEYGEVIMEDDGSYYYSPHESEGEYGRKKRIKLIVDREYETSSTGEESA
PESQRNRLSNVNSHSNINGSIYLAQNGSIIRTRRVAHTNNIKLNSPVRLGKHFKKLDKLA
VTHEERIPLNSPVITGTSAGEQNLTTRPSSGSLASSTTGPESITSKSNLAKGGGERTENG
DEQESTVDNQEVRDPLGSHSDRTQSDEEELWMGPWNNLHIPMTKL
NT seq
5178 nt
NT seq
+upstream
nt +downstream
nt
atgcgccagaggtcgtggctctttaaatggttgggaataggcattggcgttctactgctc
accgctgctagctattctcaggattcggatgactggcagtatgaggaatgcaagctctcc
agaacaggcccgcctgcaaccattgtagccatagatgaggagagtcctaatggaaccctt
ctggtggagaacatgcagataaatggaagagcagaagaccctgacagaaccatctcttta
tctctgcgagacaactacgactactgggtcattctggacccggttaaacaacgcctgtat
ctcaacagcaccggacgggttctggacagagatcctccctcctacattcagtccattgtg
gtgcaggttcagtgtactaatgagcttgttggcacggtgatcctacacgaggtgcggata
gtcgtacgggatcgaaacgacaacaccccacgctttcagcagccgcgctactatgtagcg
attaatgagctaacacctgtcggaaccaccgtcttctcaggttttacagggaacaatggg
gctgttgacattgatgatggtcctaatggacagattgaatacaccattcaatacaaccct
aaagatccgaccacaaacaggacattcgacatccctctcaccctgtctggatcagtggtt
ctgagagagaggctgaattatgaagagatcacacgctacctggtcatcattcaggccaac
gacagagctccaaacccaaaggaccggctcaccgccaccaccacgctcactgtggatgtg
ttggacggggatgacctgggcccaatgtttcttccttgcagcctggtacacaacacccgt
gactgcaaacctcttacgtaccgtgccagcatcctggagctcacagatccgagtcgagta
aaccctgtcaacgtgactcctcccattcaagctgtggatcaagacagaaacatccagcct
ccgtcagaccgcccgggaatcctgtactccattctcatcgggaagcctgcgtcatatgca
gagtatttctccttgaatcagaccacagctgagcttcaactcctgaaacccatcagcagg
gagaagtaccagcatttggacttggtaatcaaggcagagcaggataacggacaccctctc
cccgcgttcgctaatctccacattgaggtgcttgatgagaacaatcaggcgccgtatttc
caggtggccacttatcatggattcatctcggagtctgctccgctgggcacaactatctcg
agcagtgccaatctctccacccccctcgccattatcgccctggataacgacatcgaggag
acgaaagatcccatggtgcgcgtctctctggacaactacaacagcatctttgcagtgacg
cccagtgggatctcacgctacctgacactactgaggcccgtggaccatgaagaacagccg
agttatgccttcacgatgactgcctcagatggcgttcaggagagctctccagtcactgta
aatatcactgtgattgacgccaatgacaacacacccaccttctccaacgtctcctacagt
gtaaatgtttacacagacatgcagcctggagacacaatcttacagctgacagcagtggac
gctgatgagggtcccaatgggttggtgagctacaaaatcttggcaggggatcaggggcac
ttcaccgtcaatgactacacaggaaagatcaccgtgctgcctggtgtaaacctgaccgtg
ggacggtcctacgccctcaccgttagggcctcggacaacgctcctgcgtcccagagaaga
agttccattactacggtgtatattgaagtactgccccccaacaaccagagtcctccccgt
tttcctcagctcttatacagcctggaggtcagtgaggccatgaggactggagccacgctt
ctcaacatacaggcaaccgaccgtgaaagagatcccattacatatacagtcctcagagga
gatccaaacaatgtctttgaagtctcccaaacgtccgggctgttgctgctggcgaagaca
ctggacagagagatcacggatcactacacgctaacagtcacggcctccgacggcaagcca
gatgggacctcgaccgctacggtgaatatagcggtgactgatgtcaatgataatgaccct
gagttcgatcctctgctgccccttaatctcacagttcaagaagaagaggcaaatgctttt
gtgggtcaagtaaaggccactgatctggacctgggcgttaacgggcagatcagatacaga
ctggtcagtcacacagatctcttcaggatcagcactgatggcagcatcttcacagctgtg
cctctggaccgtgaggaaagggctcagtatgatttggtcgtgcaggcttcagatggggcc
aaggaccctcgccggaccactgtcacgctctccatcaaagtgctggacgtggatgacaac
agtccagccttctcccagacagcttattacgtcaccctgccagaaaacaacccggtgggc
atgattatcctcaatatcagtgcactggaccccgatctggacgcgaacgtcacgtaccgt
atcaggaccaaagaggccagagagctgtttgcactgaatcctctcaccggggagctgagg
gtacttcagtcacttgatttcgagaagctcttgccgaataggacgacatggaacttcgtg
gtagaggctgtggatggcggaagtggcaaaatgccaccagggttggcctctgttaccatc
actgtgttggacatgaacgacttcccgccagtgttcagtcaaatgctgtaccggggaatg
gtggcgcccaatgcaatcaaggggaccactgtgaccactgtacatgctgaggacctggac
ccaccgggtacggcagccagtcgagttaactataaagtggatctggagcagtttccttac
agcactagtatcttcgacgtggaagagaactctggcaatgttctcaccagggtcaatctg
aatgaggagcccaacactaaattcagtttggcagttattgcctacgatgatggggagccg
gtgaagttcaataagactctggtggagatcactgtgctgcagccgtccatcattcctgtg
ttcacgcaggaggagtacaggttctctccagtcagcgaaaatgcccctgtgggaacggtt
gcaggagtcatcttggcagccgccataaaccagaccatcgtctactccatcatcgaagga
aatgagagcggtgaatttgttgtgaacaacatcactggagttatcagcactgccaagccg
ctggactacgagagcaacagcagttacgtcctccgcgtggaagctgactccatgagggtg
gtgtcatccaacctacgagcaccatccaaaagcaacacagcaaaggtcttcatcgatgtg
caagatgagaacgaccatcctcctgagttcactaagcccttttacctcggtggggttgca
gaggatgccaggaccttcacctctgttttacaggtccaggctgtggataaggacacaggg
aattacagcgccatgctgtacaggctgattatccccccaactactgacggcaaagatggc
tttgttattgagcctttcacaggagtaattaagacagccatcatgtacagaaacatgcgg
cgctcctatttcagattcgacgtggttgctaccgatgactacggggagggactcagcagc
agcgctcaagttgtggtgtcggtggttaaccagctggacatgcaggtggtcgtatccaac
gtgccgcccactgtagttgagcagaacaaggatcgactgattgggattttagagcgctat
gtccaggaccagatcccaggagctaaagttgttgtggagtcgatcggtccgcgccgtttt
ggagagggttatgaacaggaggactactcaaaatctgacctgatgatttatgcaatcgac
cctctgaccaatagagctctctcaagacaggagctcttcaagtttttagatgggaagtta
ttagacatcaataaggagttccagccctatctaggtcgcgggggacgcattctggagatc
cgcacgccggatgtggtggagagcgtgaagaaggccgttcagtctgttggatacaccgaa
ggagctctgctggccctggccgtcatcatcatcatgtgctgtatcccagccatcctcatc
gtcatcataacctaccggcaattcaaagaacgacaggcagagtgtgcaaaaacagccagg
attcaaatggcgcttcccactggcaaatccggaggcgctgccaccaacaatctgtatgaa
gaactcggcgacagcaccatgagaggctacgggcatcaggagcaacagcagctgcttcga
ccctctctcttgagaccagaggaactctctatggagtctggtattgatccaggacaggac
tattatacacaggattactataattatgaccacggctatgacttgcctcagtatgggagt
cgacggaagctgatctctccaacaggaatgtatgatgaatatggagaggtgattatggaa
gatgatggcagctactactacagcccacacgaatccgagggagagtatggtagaaaaaag
aggatcaagcttattgtagaccgtgagtatgagaccagctccactggagaagaaagtgca
cctgaatcacaaaggaaccgcctatctaatgtaaacagccacagcaacattaatgggagc
atatacttggcccagaacggctcaataatccgaacacgacgggtcgcgcacaccaacaac
atcaagcttaactctccagtacgactgggaaagcactttaagaaactagacaaacttgct
gtcacacacgaagagagaattcctttaaacagccccgtaatcacaggcacttcagcaggt
gaacagaacctcacaaccaggccctccagtgggtccctggcctccagcactacaggtcca
gagagtataacttcaaaatcaaatttggcaaaaggaggaggtgaaagaacagaaaacggg
gatgaacaagagtccacagtggacaatcaggaggtgagagaccctttaggatcacatagt
gaccggacccagtcagatgaggaggaactctggatggggccttggaataacctgcacata
ccaatgacaaaactgtga
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integrated database retrieval system
