Puntigrus tetrazona (Sumatra barb): 122360406
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Entry
122360406 CDS
T08985
Symbol
arhgef1b
Name
(RefSeq) rho guanine nucleotide exchange factor 1b isoform X1
KO
K12330
Rho guanine nucleotide exchange factor 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04270
Vascular smooth muscle contraction
ptet04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
122360406 (arhgef1b)
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
122360406 (arhgef1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptet04131
]
122360406 (arhgef1b)
Membrane trafficking [BR:
ptet04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
122360406 (arhgef1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
Motif
Other DBs
NCBI-GeneID:
122360406
NCBI-ProteinID:
XP_043116915
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Position
16:complement(16407152..16439455)
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AA seq
1044 aa
AA seq
DB search
MDHEDAHNGRGTSGAQGSNPAMNIIGAEDEDFENDEQPMVDDQCSHFNSIDLLKSKPTHL
LVFIHHVMLQFDCAPVLCYLHADLFKNFNAKDTKKHFGEFYNTFLEKGAILKVPVPNNIG
SELDRMRPEMISDEQQRRYASEIQYMQSPEILRQLDDFRQKRMMGMTPNERELNDVESHR
PTDRIPMEMKEKAVAESLLEKMVEANPSIVADKDKSNSIFGAVAFYMKQLGVKTRALDNK
KTKSGWRPSVPSVLKPWGTNKPSKPDKKPPPYDVKPIKPNPQPPRGSIIDSCIISVRKPG
VGSGSALGPDCIEDLTISVSVTTSPDSQSDTDPKPVPDVGDASPVSTAGSLTICEPLSVI
DTLPDDSQDSGRKKTRNVRRSESLCVERRHSRRSGSTRAKQSRSRSDVDLQSTSTSHPLS
PSPQHSVSAEGGFLPDGPVTGQCFAPFPQQEEIEPRILELEQDPPNWRGLAAPEDVKKLS
KKEIKRQEVINELFTTEHAHVRMLSVLQTVFSRPLEREEIMTMTETATIFPSLDEIIEMH
YAFYENLKKLRQGDEFIVKTISTPLLNRFSGSEGEWFQKLTARFCSYQSWALEQIKSRQK
KDPRFNAFILEAESKPQCRRLQLKDIIPIEMQRLTKYPLLLENIAKSTDDEMEKENINQA
AESCRKILNHVNEEVKVMENLLILKDYQRRLDTSGLKPSNDLYSEYKNIDLSTRTMLFEG
PLTWRVTKEKAIDVHCVLVSDLLVLFQKQDDKMVLKCQSKSNIAVQEGKQMLSPIIKLES
VFLRDVATDPKALYVIFTWESGAQIYELVAQTIGEKKNWAEVIRATVDELKKRGGGNKLK
RDGRSGSMPSSTSGPAYSPVHPPLSPTENGGDLLKSRGGRFKDSLTDEKNKETYPSLIDY
LASNGFDPLSHSHSPPEKSAIAALDEVMYLKRLLVGSISLSDDSQTLGENGGTAPESQVA
DGVEESSTEGRTEGEESGGDGVNKGEEERGISAPLVLSQERLEEVQRRLQMLEEQLKRLQ
SVEEDHYKLQEALAKYSLQGGHYN
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggatcacgaagacgcccataacgggcgcgggacgtcaggtgctcagggttcaaatcca
gccatgaacataattggagcagaggatgaagactttgagaatgatgagcaacctatggtg
gatgatcagtgcagtcactttaacagtattgatctgttgaagtccaagcccacccacctg
ctggtcttcattcatcatgtcatgctacagtttgactgtgctcctgtgctatgctacctt
catgctgacctcttcaagaacttcaatgccaaagacaccaagaagcactttggggaattc
tacaacactttcctggaaaaaggagcgattctcaaagtacctgtgccaaataacataggc
tctgaactggatcgcatgcgcccagaaatgatcagcgatgaacaacaaagacgctatgct
agtgaaatccagtacatgcagagtccagagatactgcgacagctcgatgacttcaggcag
aagaggatgatgggaatgactcccaatgagcgtgaactaaatgatgtggaatcccatcgt
cctactgaccgcatccccatggaaatgaaggagaaggcagtagcagaatctttgctggaa
aagatggtagaggccaacccctcaattgttgccgacaaagacaaaagtaactccatcttt
ggagcagttgccttttatatgaagcaacttggtgtcaaaaccagagcacttgacaacaag
aagactaagtcaggatggcggccctctgtcccttccgtgctgaagccatggggaaccaac
aaacccagcaaacctgacaaaaaacctcctccatatgatgtaaagccaatcaaaccaaat
ccccagcctcctcgagggtctataattgatagctgcattatttcagtgcggaaacctggt
gtggggtcaggtagcgctcttggccctgactgcattgaagacttgaccatcagcgtcagt
gtgactaccagtccagactctcagagtgacacggacccaaaaccagtcccagatgttgga
gatgcatctcctgtcagtacagctgggagtctcaccatctgtgaacctctctccgtcatt
gacacacttccagatgacagtcaggacagtggcagaaagaagacaaggaatgtgcgccgc
agcgagagcctttgcgtggagcgccgtcactctcgccgtagtggctctacccgggccaag
cagtctcgctcccgtagcgacgtggacctgcagtcaacctctacctctcaccccctctca
ccctccccacagcattcagtctctgcggaaggtggatttttgcctgacggccccgtcact
ggtcaatgttttgcccccttccctcagcaggaggagatagagccccgaatcctggagctt
gagcaggacccacccaactggaggggtcttgctgctcctgaggacgtgaaaaaactgagc
aagaaagaaatcaaaagacaagaagtcattaatgagctgtttacgacggagcacgctcat
gtccgtatgctgagtgtattgcagactgtgttttctcgtccgctggagagggaagagatt
atgaccatgactgaaacggccaccatcttccccagcctcgatgagatcatagagatgcac
tatgctttctatgagaacctaaaaaaactgcggcagggggatgagttcattgtcaaaacc
ataagcacaccacttctcaacaggttcagtggctcagaaggagaatggtttcagaagctc
accgcacgtttctgtagctaccagtcctgggcgctggagcagataaagagcagacagaag
aaagatccccgttttaatgctttcatactggaggcagagagtaagccacagtgtcggagg
ctacagctgaaagatatcattcccatagagatgcaaagactaactaagtatcctcttctg
ctggaaaacattgccaagagcactgatgatgaaatggaaaaagagaacattaaccaagca
gcagaatcctgtcgtaagatcctcaaccatgtcaacgaagaagtcaaagtcatggagaac
ctgctgattttgaaagactaccagcgccggctggacacctcaggactgaaaccgagcaat
gacctctacagcgaatacaagaacattgatctgagcaccagaacgatgctgtttgaagga
cctctgacatggagggtgaccaaggagaaagcgattgatgtgcactgtgttttagtgtca
gacctcctggtcttgtttcagaagcaggatgataagatggttttgaagtgtcagagcaaa
agcaacatcgccgttcaggaaggcaaacagatgctgagtccaatcattaaactagaatct
gtttttctcagagacgtggccactgacccaaaagccctctatgtcatcttcacctgggaa
agcggagcacagatctatgaactagtggctcagactattggggagaagaaaaattgggca
gaggtgattagggctacggttgacgagttgaagaagaggggcggcggcaataagctgaaa
cgagatggcagaagtggcagcatgcccagtagcaccagtggacccgcatacagccctgtt
catccccctcttagccccactgagaacggaggagatctgttgaaaagtcgtggtgggcga
tttaaagacagtcttactgatgagaagaataaagaaacttatccttcactcatagactac
ctagcttccaatggctttgacccgctcagccatagccactcccctccagagaagtctgct
attgctgctttggatgaagtcatgtatttgaagaggctattggtcgggagtattagcttg
tctgatgactctcagactcttggggaaaatggagggacggcacctgaaagccaggtggca
gatggagtagaggaatccagcacagaaggaagaactgaaggagaagagagtggaggagat
ggggtgaataaaggagaagaggaaagagggatcagcgcccctctagtgctttctcaggaa
cgcttggaggaggtgcagaggagactgcagatgcttgaggagcaactgaagagactgcag
tctgttgaggaggaccattataagttgcaagaagctcttgctaaatattcacttcagggg
ggccattacaactga
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