Candidatus Profftia tarda: PROFFT_A_03820
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Entry
PROFFT_A_03820 CDS
T07286
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptf
Candidatus Profftia tarda
Pathway
ptf03030
DNA replication
ptf03410
Base excision repair
ptf03420
Nucleotide excision repair
ptf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PROFFT_A_03820 (ligA)
03410 Base excision repair
PROFFT_A_03820 (ligA)
03420 Nucleotide excision repair
PROFFT_A_03820 (ligA)
03430 Mismatch repair
PROFFT_A_03820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptf03032
]
PROFFT_A_03820 (ligA)
03400 DNA repair and recombination proteins [BR:
ptf03400
]
PROFFT_A_03820 (ligA)
Enzymes [BR:
ptf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PROFFT_A_03820 (ligA)
DNA replication proteins [BR:
ptf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PROFFT_A_03820 (ligA)
DNA repair and recombination proteins [BR:
ptf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PROFFT_A_03820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PROFFT_A_03820 (ligA)
MMR (mismatch excision repair)
DNA ligase
PROFFT_A_03820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PROFFT_A_03820 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
DUF4796_N
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
CAD6510512
UniProt:
A0A8E4GHU1
LinkDB
All DBs
Position
1:complement(727291..729327)
Genome browser
AA seq
678 aa
AA seq
DB search
MTPTTVEHFKKLEDLRTKLRYHAYQYHVLNQPEIPDAEYDRLMHELRLIEKQGYPHLIPR
DSPTQLVGGSPLAAFRQVLHEVPMLSLDNIFDEDNFLSFKKRLHTRLKTTEPLTFCCELK
IDGLAVSLLYEDSLLVRGATRGDGTIGEDITSNLKMVRGIPLNLQGNNIPRRLEVRGEVF
MPLAGFATINEEARHANKKVFANPRNAAAGSLRQLDPLATSKRPLLFSCYGLGLFKDGEL
PGGHYESLQQLKKWGLPVNNYIKLCNSSDEVIKFCHQAEKERLTLDFDIDGVVIKVNNFA
IQKQLGFMARAPRWATAFKFTPQEQITVLNSVDFQVGRTGTITPVARLEPVRVAGVIVSN
ATLYNADEIQRLRLCIGDTVVVRRAGDVIPQVVGVLEDRRPSNAQKITFPRRCPVCNSDL
ERIRGEAVSRCTGILVCSAQRKASLKHFVSRRAMNVVGIANKIIDQLVEKSYVNTPSDLY
RLTALILSGLEHIGSKSATNLLQAIEQSKKTTMARFLYALGIPRVGEATAMNLALYFGSL
EALRNADIEALQCVKDVGRVVAEHLFHFLSQEQNQKVIDELLGPDIGIYWSDTPVIIDNN
IPSPFAGKTVVLTGSLNLMTRDVVKDTLIALGATITSKVSKKTDIVIFGARAGCKLYQAK
KLKIPVINEREMIRILSR
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactccaactactgtagagcactttaaaaaactagaggatctacgtactaagttgcga
tatcatgcttatcagtaccatgtgttaaaccaaccagagattcctgacgctgaatacgat
cgcctaatgcatgaactacgtcttatagaaaagcaaggttatcctcacttgataccccgt
gactctccaactcagctagtaggaggatctcctcttgctgcattcagacaagttcttcat
gaagtgcctatgctttccttggataatatttttgacgaagataatttcttatcttttaag
aaacgtcttcatacacgtctgaagactacagaaccgttgactttttgctgtgaattgaag
attgatggtttggctgtgagtctgctatatgaagatagtctgctggtgcgaggcgctact
cgtggtgatggtactataggagaagatattacatctaacctaaagatggtccgtggtatt
cccttgaatttacaaggaaataatattccgcgccgtctagaagtgcgtggagaagttttt
atgccattagccggttttgcgacaataaatgaagaagctcgtcacgccaacaagaaggtt
tttgcaaacccaaggaatgcagctgcaggatcattgcgtcagctagatccactggctacg
tctaaacgtcctctacttttctcttgttacggtctaggtttgtttaaagatggcgagtta
ccaggaggtcactatgaatccttgcagcagctcaaaaagtggggactaccagtaaataat
tatataaaattatgtaatagtagcgatgaggtaataaaattttgtcatcaagctgagaaa
gaacgtttgacgctagactttgatattgacggtgttgttattaaagtaaataattttgcg
atacaaaaacagcttggttttatggcacgtgcacctcgttgggctacagcatttaaattc
actcctcaggaacaaataactgttttaaacagtgttgattttcaagtaggacgtaccggc
actattacacctgttgctcgtctagagcctgttagagttgctggtgtcattgtgagtaat
gctactttgtataatgccgatgaaattcagcgtttgagattatgtattggggatactgtt
gttgtgcgccgtgctggagatgttatcccacaggtagtcggcgtgctggaggatagacgc
cctagtaatgcacagaagattaccttcccgcggcgttgtccagtatgtaattctgacctt
gagcgcattagaggagaagcagtgtcgcgttgtactggtatcttggtatgtagtgctcag
cgtaaagcatcacttaaacactttgtttcacgccgagctatgaatgtagtaggtattgct
aataaaataattgaccagttagttgaaaaaagttatgtcaatactccatccgatttatat
cgcctgacggcactgatactatctgggttagagcacataggttctaagtctgctactaat
ttacttcaagctatagaacagtctaagaaaactacaatggcaagattcttatatgcttta
ggaatacctagagtaggggaagctacagcgatgaatcttgcattatattttggttcctta
gaggctttgcgaaatgctgatattgaagccctgcaatgcgtgaaggacgtcggtagagta
gttgcagaacacctgtttcattttctgagtcaagagcagaatcagaaagtgatcgacgag
ttattaggccctgatattggaatttactggtctgatacgcctgtaattattgataataat
attccaagcccttttgcaggcaaaacagtagtattaacaggatccctaaacttgatgact
cgtgatgtagtcaaagatactctcattgccttaggagcaaccattactagcaaagtttcc
aagaaaaccgatattgttatttttggcgcaagagcaggttgcaagttgtatcaagctaaa
aaattaaaaattccagttattaatgaaagagagatgatcaggatattgagccgataa
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