Panthera tigris altaica (Amur tiger): 102951628
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Entry
102951628 CDS
T02988
Symbol
SMG6
Name
(RefSeq) SMG6, nonsense mediated mRNA decay factor
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
ptg
Panthera tigris altaica (Amur tiger)
Pathway
ptg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102951628 (SMG6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptg03019
]
102951628 (SMG6)
03032 DNA replication proteins [BR:
ptg03032
]
102951628 (SMG6)
Messenger RNA biogenesis [BR:
ptg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
102951628 (SMG6)
mRNA cycle factors
Common to processing body (P body) and stress granule
102951628 (SMG6)
DNA replication proteins [BR:
ptg03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
102951628 (SMG6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
PIN_9
Motif
Other DBs
NCBI-GeneID:
102951628
NCBI-ProteinID:
XP_007076185
LinkDB
All DBs
Position
Un
AA seq
1382 aa
AA seq
DB search
MKEPRQRKDNRRPDLEIYKPGLSRLRNKPKIKEPSGGDEFKDEIVNDRDCSAVGNGTQLI
KDVCKELDNQHQNGPVDPENTRAQESFPRTSGQEDRSLRIIKRTKKPDMQIYQPGRRLQT
VTKESTSRVGEEEILNQVEQLRVEEDEYRGNVKEEVVNKPDKDEAEKSLNGDRVRVAKGE
KGRRIEKGEGIKKVNDDPAQGKPGSAKRYSRSDKRRNRYRTCSTSSAGSNNSAEGAGLTD
NGCRRRRQDRTKERPRLKKQVSMSSTDSLDEDRIDESDGPRRSSERKKHLERSWSGRGEG
EQKSNGKENRGTLHVTFDAETMNKDSPMVRSSREDVDRIKPDKGLSSGGKGSEKQESKNL
KQELRGRGRGILILPAHTTLSVNSAGSPESAPLGPRLLFGSGSKGSRSWGRGGTTRRLWD
PNNPDQKPALKSQTPQLHFLDTDDEVSPTSWGDSRQAQASYYKFQNSDNPYYYPRTPGPA
SQYPYTGYSPLQYPVGPTNGVYPGPYYPGYPTPAGQYVCGPLPASTMSPEEMEQHMRNMQ
QQELHRLLRVADNQELQLSNLLSRDRISPEGLEKMAQLRAELLQLYERCILLDIEFSDNQ
NVDQILWKNAFYQVIEKFRQLLKDPNVENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYK
FKLEDYMDGLAIRSKPLRKTVKYALISAQRCMICQGDIARYREQANDTANYGKARSWYLK
AQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKA
EQMEKKQHEELELSPDQWRKGKKSTFRHVGDDTTRLEIWIHPSHPRSSQGTESGKDSEQE
NGLGSLSPSDLNKRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGST
RMLQLMTINMFAVHNSQLKDCFSEECRSVIQEQAAALGLAMFSLLVRRCTCLLKESAKAQ
LSSPEDEDDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPSQVAMDV
WSMLADFCNILTAVNQSEVPLYKDPDDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTS
DKVIAADCKRVTVLKYFLEALCGQEEPLLAFKGGKYVSVAPVPDTMGKEMGSQEGKQLED
EEEDVVIEDFEEDSEAEGSGGEDDIRELRAKKLALARKIAEQQRRQEKIQAVLEDQSQMR
QMELEIRPLFLVPDTNGFIDHLASLARLLESRKYILVVPLIVINELDGLAKGQETDHRAG
GYARVVQEKARKSIEFLERRFESRDSCLRALTSRGNELESIAFRSEDITGQLGNNDDLIL
SCCLHYCKDKAKDFMPTNKEEPIRLLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQ
VG
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagcccaggcagcgcaaagataacaggcgcccagatctggaaatctataagcct
ggtctttcccggctaaggaacaaacctaaaatcaaggaaccttctgggggtgatgaattt
aaggatgaaattgttaatgacagagattgttctgctgttggaaatggtacacagctcatt
aaagatgtctgcaaggaactggataatcaacaccaaaatggtcctgtagatccagaaaat
actcgggcacaggagtcctttcctaggacttctggacaagaggatcgaagtctaagaatt
atcaagagaacaaagaaacctgacatgcagatctaccagcctggaaggcgtttgcagact
gttaccaaagaatcaactagcagggtgggtgaggaagaaatcctcaaccaggtagaacaa
ctgagagtagaagaagatgaatataggggaaatgtgaaagaggaggttgtgaataaacca
gataaagatgaggcagaaaagagcctcaatggtgacagagtaagggttgcaaagggagaa
aaaggaaggaggattgaaaagggggaggggataaagaaagtgaatgatgacccggcacag
gggaagccaggttctgcaaagcgctactcccgctcagacaaacggaggaaccgataccgc
acttgcagtaccagctcagctggcagcaacaacagtgctgagggggctggcctgactgat
aacggatgtcgtcgccgccgacaggatcggaccaaggagagaccacgactgaagaagcaa
gtatctatgtcctccactgattctttagacgaggacagaattgatgagtctgatggaccc
aggaggagctcggaaaggaagaaacatttagaaagaagctggtctggccggggggaggga
gagcagaaaagcaacgggaaagaaaaccgaggcacacttcatgtcacttttgatgcagaa
accatgaacaaagattcccccatggtgagatcatccagggaggatgtggataggataaag
cctgacaaaggcttgagcagtgggggcaaaggctctgagaagcaagagtccaaaaacctg
aagcaagaacttcggggtcggggacgaggcattctgattctgcctgcccataccacccta
tctgtcaattcagccggttctccagaatctgcacctttgggacctcggcttttatttgga
tctggtagtaagggatctcggagttggggccgaggaggcaccactcgacgattatgggac
ccaaacaatcctgatcagaaacctgctctaaagagccagacgccccaactacatttcttg
gacactgatgatgaagtcagccctacttcttggggtgactcccgccaggcccaagcatct
tactataagtttcaaaactctgacaacccctattattacccccggacaccaggtcctgcc
tcccagtatccttatacaggctatagccctctgcagtacccagtgggccctacgaatggt
gtgtaccctgggccttactacccgggctacccgactccagcaggacagtatgtttgtggc
cctcttcctgccagcaccatgagtcctgaggagatggaacagcacatgaggaacatgcag
cagcaggagctgcataggcttctccgggtggctgacaaccaggaactgcagctcagcaac
ctgctctccagggaccgcatcagtccggagggcctggagaagatggctcagctcagagct
gaactgctgcagctatatgagcgctgtatcctattagatattgagttctctgataatcag
aatgtggatcagatcctgtggaagaatgctttctatcaggtgattgagaagttcaggcag
cttctcaaggatccgaatgttgagaacccagagcagattcggaacagacttttggagctc
ttggatgagggtagtgacttctttgatagtttgcttcagaagctgcaggttacttacaag
ttcaaactggaggactacatggatggtcttgccattcgcagcaagccattacgcaagaca
gtaaaatatgctttgatcagtgcccagcggtgtatgatttgccaaggagatatcgctagg
tatcgggaacaagccaatgacacagcaaactacgggaaagcacgcagttggtacctaaag
gcccagcatattgctcccaagaatgggcgcccctataaccagttggctctgctggcagtg
tacacgaggaggaagcttgatgctgtctattactatatgcgcagtttagctgccagcaac
cctatcctgactgccaaggagagtctcatgagcttgtttgaagagaccaaacgaaaggca
gaacagatggaaaaaaagcaacatgaggagttggaactgagccctgaccaatggcggaaa
ggaaagaagtctactttccggcatgttggagatgacaccactcgcttagagatctggatc
cacccatcacatcctcggtcctcccagggcactgaatctgggaaggattctgagcaggag
aatgggctgggcagcctgagcccaagtgatctgaacaaaaggttcatcctcagttttctc
catgcccatgggaagctgtttacccggattgggatggagacattccctgcggtggctgag
aaggtcctcaaggagttccaggtgttgctgcagcatagcccctctcctattggaagtacc
cgcatgctgcagcttatgaccatcaacatgttcgctgtgcacaactctcagttgaaagac
tgcttctcggaggagtgtcgctctgtgatccaggagcaagcggcagcgctgggcctggcc
atgttttctctcctggtgcggcgctgcacctgcttacttaaggagtctgccaaagctcag
ctgtcctctcctgaggacgaggatgaccaagatgacatcaaggtgtcttccttcgtcccg
gacctgaaggaactgctccccagtgtgaaagtctggtcagactggatgctcggctaccca
gacacctggaaccctccgcccacgtccctggacctgccctcacaggttgctatggatgtg
tggtcgatgctggctgatttctgtaacatattgactgcggtgaatcagtctgaggtgcca
ctgtacaaggacccggacgatgacctcacccttcttatcctggaagaggatcggcttctc
tcgggctttgtccccttgctcgctgcccctcaggacccctgctacgtggagaaaacctcg
gataaggttattgcagccgactgcaaaagggtcacagtgctgaagtattttctggaagcc
ctttgtggacaagaagagcctctgctggcattcaagggtggaaaatatgtgtcagtggca
cccgtcccagacaccatgggaaaggaaatgggaagccaagagggaaaacaactggaagat
gaggaggaggacgtggtgattgaagactttgaggaagattcagaggccgaaggcagcggg
ggtgaggatgacatcagggaacttcgggccaagaagctggctttggccaggaagatagct
gagcagcagcgtcgccaagaaaagatccaggctgtcctggaggaccagagtcagatgagg
cagatggagctcgagatcagacccttgttccttgtaccagacaccaacggcttcattgac
cacctggccagtctggcacggctgctggagagcaggaagtacatcctggtggtgcccctc
atcgtgatcaatgagctggacggcctggccaaggggcaggagacagaccaccgggctggg
ggctatgcccgtgtggtgcaggaaaaggcccggaagtccatcgagttcctcgagcggcga
tttgagagtcgggactcttgtctgcgggccctgaccagccgtggcaatgaactggaatcc
atcgccttccgcagcgaggacattactggccaactgggtaacaacgatgacctgatcctc
tcctgctgcctccactactgcaaagacaaggctaaggacttcatgcccaccaacaaagag
gagccaatccggctactgcgggaggtggtgctgttgacggatgaccgcaacctgcgtgtg
aaggcactgacgaggaatgtgcctgtgcgggacatcccagccttcctcacgtgggcccag
gtgggctga
DBGET
integrated database retrieval system
