Pelotomaculum thermopropionicum: PTH_2527
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Entry
PTH_2527 CDS
T00519
Symbol
Lig
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pth
Pelotomaculum thermopropionicum
Pathway
pth03030
DNA replication
pth03410
Base excision repair
pth03420
Nucleotide excision repair
pth03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PTH_2527 (Lig)
03410 Base excision repair
PTH_2527 (Lig)
03420 Nucleotide excision repair
PTH_2527 (Lig)
03430 Mismatch repair
PTH_2527 (Lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pth03032
]
PTH_2527 (Lig)
03400 DNA repair and recombination proteins [BR:
pth03400
]
PTH_2527 (Lig)
Enzymes [BR:
pth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PTH_2527 (Lig)
DNA replication proteins [BR:
pth03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PTH_2527 (Lig)
DNA repair and recombination proteins [BR:
pth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PTH_2527 (Lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PTH_2527 (Lig)
MMR (mismatch excision repair)
DNA ligase
PTH_2527 (Lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PTH_2527 (Lig)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
HHH_8
BRCT_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BAF60708
UniProt:
A5CZ68
LinkDB
All DBs
Position
complement(2633606..2635645)
Genome browser
AA seq
679 aa
AA seq
DB search
MTQDLERARERAEELRREIEHHNYLYYVLDRPAITDAQYDRLMRELERLEKQFPALVTPY
SPTQRVGGRPREGFAAVRHLSPMLSLANAFDERELRDFDRRVRQALPGEQVRYVVELKID
GLAVSLYYENGILVRGATRGDGDTGEDITENLKTVRSVPLRLRRPVPALEVRGEAFMPKE
AFSRLNEGREEAGETLFANPRNAAAGSLRQLDPKITASRQLDLFVYGTGYGEWGRAVFPD
GERTAPQEHAEVLELLKELGFKVNPEYRLFDRLDELVEYCLGWQARRFELPYAVDGLVIK
VNSLAQQERLGATMKSPRWAVAYKFPPEQAVTKVKDIFVRVGRTGVLTPTAELEPVRLAG
TTVSRATLHNEDIIREKDIRIGDKVLVQKAGDIIPEVVAVLKEERTGAEKAWAMPGRCPS
CGAGVVRAEGEAAVRCTNMACPARLQEGLIHFASRDAMDIAGLGPAVIAQLVSAGLVGDP
ADLYALRYEDLVPLERLGPKSARNLLEAIEASKGRSLARLIFALGIRHVGERAAKILANH
YQSLSGLMSATQEELVNIPEIGPKIAASIVEFFSNEQNRKVIDKLVKAGVNTLTEKVIRE
GGGPLNGKVFVLTGVLKDFSRQQAQELIESLGGRISSSVSRNTDFVVAGENPGSKYEKAL
TLGVKILDENEFRELTGRK
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
ttgacccaggatttggaacgggcccgggagcgggccgaagagctgcgcagggagatagag
caccacaactatttatattacgtgctggaccggccggccataacggacgcccagtacgac
aggctgatgagggaactggaaaggctggaaaagcagtttcccgccctggtaaccccttat
tcgcccacgcagcgggtgggcggccggcccagggaaggatttgccgcagtgcggcacctt
tcgcccatgctcagcctggccaacgcctttgatgaaagagaactgagggactttgaccgg
cgcgtgcggcaggccctgcccggcgagcaggtccgttatgtggtcgaactgaaaatcgac
ggactggccgtgtccctgtactacgaaaacggcatcctggtcaggggggccaccaggggc
gacggcgatacgggcgaggacattacggaaaacctgaaaacggtaaggagcgtccccttg
cgcctgcgccggcccgtgcccgccctggaagtaagaggggaggcctttatgcccaaggag
gctttttcccggctgaatgaaggcagggaagaggcgggggagacccttttcgccaatccg
cgcaatgctgccgcgggctccctgcgccagctcgaccctaaaattaccgcctcgcgccag
ctcgaccttttcgtgtacggaaccggatacggggaatgggggcgggccgtttttcctgac
ggggaaagaaccgccccgcaggagcatgccgaagtgctggaattgctgaaggaactgggt
tttaaggtcaatccggagtacaggcttttcgaccgcctggacgagctggtagagtactgc
cttggctggcaggcccgccggtttgagcttccctatgccgtggacgggctggtaataaag
gttaattccctcgcccagcaggagagactgggcgctaccatgaagagcccgcggtgggcc
gttgcctacaagttcccgccggagcaggccgtgacgaaggtaaaggacatcttcgtaagg
gtggggcgcaccggcgtgctgacgccaactgccgagcttgaaccggtgcgccttgccggg
actaccgtgagcagggctaccttgcacaacgaggacatcatcagggagaaagacatccgt
atcggggataaggttctggtgcagaaggcgggagatataatcccagaggttgtggccgtt
ttaaaagaagaaaggaccggcgccgagaaggcctgggccatgcctggccgctgcccgtcc
tgcggggcgggggtggtgcgggccgaaggcgaggcggccgtccgctgcaccaacatggcc
tgtccggcaaggctgcaggagggcctgatccattttgcctcccgcgatgccatggatatt
gccgggctggggccggcggtaattgcccagctcgtttcggccggcctggtgggcgatccg
gccgacctgtacgccctccgctatgaagaccttgtgccgctggaacgcctggggcccaaa
tcagcccggaacctgctggaggctattgaagccagcaagggcaggtccctggccaggctg
atcttcgccctcggcatccgccacgtgggggagcgggcggcaaaaattctggccaatcat
tatcaatctttatcggggttgatgtccgctactcaagaagaactggtaaacattccagaa
ataggtccaaagatcgctgccagtatagtcgaatttttttccaacgagcagaacaggaag
gttattgataagctggttaaagcaggtgtcaacactctcactgaaaaggtaatacgggaa
ggcggtgggcccctgaacgggaaagttttcgtgcttaccggtgttttaaaagatttcagc
cggcagcaggcgcaggaactgatcgaaagtctggggggaagaatttcatcaagcgtgagc
aggaatacggactttgttgttgcaggtgaaaaccctggctcaaaatatgaaaaagccctt
actctgggcgtgaagatattggatgaaaacgagtttagagagctaaccggacgcaagtaa
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