Providencia stuartii 2017-45-35: OI982_20485
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Entry
OI982_20485 CDS
T09168
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptha
Providencia stuartii 2017-45-35
Pathway
ptha03030
DNA replication
ptha03410
Base excision repair
ptha03420
Nucleotide excision repair
ptha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OI982_20485 (ligA)
03410 Base excision repair
OI982_20485 (ligA)
03420 Nucleotide excision repair
OI982_20485 (ligA)
03430 Mismatch repair
OI982_20485 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptha03032
]
OI982_20485 (ligA)
03400 DNA repair and recombination proteins [BR:
ptha03400
]
OI982_20485 (ligA)
Enzymes [BR:
ptha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OI982_20485 (ligA)
DNA replication proteins [BR:
ptha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OI982_20485 (ligA)
DNA repair and recombination proteins [BR:
ptha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OI982_20485 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OI982_20485 (ligA)
MMR (mismatch excision repair)
DNA ligase
OI982_20485 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OI982_20485 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
Nlig-Ia
HHH
RNA_ligase
DZR_2
Zn_ribbon_NUD
DUF4874
Motif
Other DBs
NCBI-ProteinID:
WIJ73778
LinkDB
All DBs
Position
4355007..4357022
Genome browser
AA seq
671 aa
AA seq
DB search
MTTKQHLDTLKQQLRHHEYQYHVLDAPEIPDAEYDKLMEELKAIEAEHPEWITSDSPTQR
VGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKDQQEQTFCCELKLDGLAV
SLLYENGELVQAATRGDGTVGENITSNVRTIRAIPLRLTGENIPARVEIRGEVFMPQKGF
EALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGETLPDTHYE
RLMQFKKWGLPVSEYVQLRTGAQAVLDFYHEIEKARPTLGFDIDGVVIKINDIATQEELG
FVSRAPRWATAFKFPAQEQMTLLKDVEFQVGRTGAITPVARLEPVQVAGVTVSNATLHNA
DEIERLGVHIGDTVVIRRAGDVIPQIVSVVESERPADSREIVFPTHCPVCGSDVERVEGE
AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKNPADLYQLSAGI
LTGLDRMGPKSAQNLVEALNKSKSTTLARFIYALGIREVGEATAANLAAHYGTLEALMAA
DEESLKTVQDVGHVVAKHVVNFFREEHNQTVIQALIDKANIHWPEAVAVDVSTIDSPFAG
KTVVLTGSLSQLTRDEAKDKLVALGAKVSGSVSKKTHLVIAGEAAGSKLAKANELGIPVI
DENELIRLLEA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgactacaaaacaacatctcgatacactcaaacaacaattacgtcatcatgaatatcaa
tatcatgtattagatgcacctgaaatcccagatgcagaatatgacaaactcatggaagag
ctgaaggctatcgaagcggaacatcctgaatggatcaccagtgactcaccgactcagcga
gtgggtgcggctccattagcggcgtttgacaccgtacgtcatgaaataccgatgttatcg
cttgataacgtatttgatgaagaaagctatcttgctttcgacaaacgcgtgagagaccga
ttaaaagatcagcaagaacaaaccttctgttgtgaattaaaattagatggccttgcggtg
agcttactgtatgagaatggcgaactcgtccaagccgctactcgcggtgatggaactgtg
ggggaaaatattacctctaatgttcgtacaattcgtgctattccacttcgtttaacgggt
gaaaatattcctgctagggtagaaattcgtggtgaagtatttatgccacaaaaaggcttt
gaagcattgaatgaggaagcgcgccgtacaggtggaaaagttttcgctaaccctcgtaac
gcggcagcggggtcattacgccaattagacccacgtattacagcgaaaaggcctttaacg
ttctactgctatggcgtggggctggtggaaggcgaaacactgccagatactcattatgag
cgactgatgcaatttaagaagtgggggttacctgtaagtgagtatgtgcaattacggaca
ggcgctcaggcggtattggacttttatcatgagatagaaaaagctcgcccaacattaggc
tttgatattgatggggtcgtcattaaaattaacgacattgcaacccaagaagagttaggc
tttgtgtctcgggcacctcgttgggcaacggcgtttaagttcccggctcaagagcagatg
acattgctaaaagatgttgaattccaagttggacgtaccggagcaattacgcctgttgca
cgtttggaaccagttcaagttgccggcgtgacagtcagtaatgcgacgctacacaacgct
gatgaaattgagcgcttaggggttcatatcggtgatactgttgtgatccgtcgtgcgggc
gatgtgatacctcaaattgtgagtgttgttgagtctgaacgccccgccgatagccgagaa
attgttttcccaactcactgcccagtctgtggctctgatgtggaacgtgtcgaaggtgag
gccgttgcgcgttgtactggtgggttgatttgtggcgcacaacgtaaagaagcactgaaa
cattttgtctcacgccgtgcgatggatgtggatggcatgggcgataagatcatcgaccaa
ttagttgaaaaagaatatgtgaaaaatccggctgatctgtaccaattaagtgcagggata
ttgacgggtttagatcgcatggggccaaagtcggcacaaaatttagtggaagccctaaat
aaatcgaaatcaacgactcttgctcgttttatttatgcgttaggcattcgtgaggtcggt
gaggctaccgcggcaaatttagcggcgcattatggcacccttgaagccctaatggcggca
gatgaggagtcactcaaaacggtacaagatgttggtcatgtggtggctaagcatgtcgtt
aactttttccgcgaggagcataatcaaactgtcattcaagcgttaatagataaggcgaat
attcattggccagaagctgttgctgtagatgtgagtacgatagatagtccatttgcaggg
aaaaccgtggtattgacgggctctttgagccaactgacacgggatgaagcaaaagataaa
ttagtggcactcggcgctaaagtctctggcagtgtctctaagaagacgcatttagtcatt
gcaggtgaggcggcaggttcaaaactggcaaaagcaaatgagctaggtatacctgtcatt
gacgaaaatgagctaattcgcttattagaagcctaa
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