Paenibacillus thiaminolyticus: NDS46_26885
Help
Entry
NDS46_26885 CDS
T08812
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pthi
Paenibacillus thiaminolyticus
Pathway
pthi03030
DNA replication
pthi03410
Base excision repair
pthi03420
Nucleotide excision repair
pthi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pthi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NDS46_26885 (ligA)
03410 Base excision repair
NDS46_26885 (ligA)
03420 Nucleotide excision repair
NDS46_26885 (ligA)
03430 Mismatch repair
NDS46_26885 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pthi03032
]
NDS46_26885 (ligA)
03400 DNA repair and recombination proteins [BR:
pthi03400
]
NDS46_26885 (ligA)
Enzymes [BR:
pthi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NDS46_26885 (ligA)
DNA replication proteins [BR:
pthi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NDS46_26885 (ligA)
DNA repair and recombination proteins [BR:
pthi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NDS46_26885 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NDS46_26885 (ligA)
MMR (mismatch excision repair)
DNA ligase
NDS46_26885 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NDS46_26885 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
DNA_ligase_ZBD
RNA_ligase
BRCT_2
LysW-like_globular
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WCF07852
LinkDB
All DBs
Position
complement(5902065..5904077)
Genome browser
AA seq
670 aa
AA seq
DB search
MEQLVAELNRYNYHYYTLDNPVISDKEYDALYDELAALEKETGTIHPDSPTQRVGGELLK
GFAPHRHLARLWSLDKAQSADDLHTWHQRVLRLIQDYNTKNPDREPLPDPAYVVELKYDG
LTLNLTYTDGKLVQAATRGNGTVGESILPQVKTIRSIPLTIPYKEGTIEVQGEGIMNLSV
LEAYNKTAAEPLKNARNAAAGALRNLNPQVTAQRKLNAFFYNIGYADQLAFQTHQEMMAF
LKDNHFKVNPYISYFDSIEAVHAELEQIQERRLTLDYLIDGAVVKITDMRTREVLGYTDK
FPRWAIAFKFEAEETTTVLEEVNWEVGRTGKITPVARVEPVELAGVTVQNCTLNNVGDIE
RKNLKHALGSRVFIRRSNDVIPEILGKVTEEQDGEEIVFPTQCPSCGSELEMRGAHLFCN
NKLNCKPQIVGRIVHFASRDAMDIETFSIMTAEQIYNELDVHDPSDLYTLTFDQLVGLNR
FGEKKANNLLQAIEASKTRDLSAFLFALGIPNTGKTTTRALAEHFGTLEGVMNATREDLI
SVPDVGDIVADSIVSFFEDEVNKTSVKRLLEFGVRPQPIEKPKPVSTDSFFYGKTVVLTG
TLHLMSREEATAKLEACGAKVTGSVSKKTDLVVAGEKAGSKLAKAEQLGIPVITDENELV
RLLQEAMPAE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaacaactcgtggcggaattgaaccggtacaattaccattactatacgctcgacaat
ccggtgatcagcgacaaggaatatgatgccctgtatgacgaattggccgcactggaaaaa
gaaacaggcaccatccaccccgattcgccaacccagcgcgtgggcggggagctgctgaag
ggcttcgccccgcatcgtcatctggcgcggctatggagtctggacaaggcccagtcggca
gatgatctccacacctggcatcaacgcgtgctgcgcctgattcaggattacaacaccaag
aatccggatcgggagccgctcccggatcccgcttatgtcgtcgagctgaaatacgacggg
ctgacgctcaacctgacgtatacggacggcaagctggtccaggcagcgacgcggggcaac
ggcaccgtcggcgaatcgattctgccgcaagtcaagacaatccgttccattccgttgacc
attccttacaaggaagggacgatagaggtacagggcgaggggattatgaacctctccgtg
ctggaggcgtacaataagaccgccgccgagccgctcaaaaatgcacgcaacgccgcggcc
ggggcgcttcgcaacctgaatccgcaagtcacggcgcagcggaagctgaacgcgttcttc
tataatattggttacgcggatcaactggccttccagacccatcaggagatgatggcgttc
ttgaaggacaatcatttcaaggtcaatccgtatatctcctacttcgattcgatcgaagcg
gtgcatgccgagctggagcagatccaggaacggcgcctgacgcttgattacctgatcgac
ggggcggtcgtcaagattaccgatatgcgcacccgggaggttttgggctacaccgacaag
ttcccgcgctgggccatcgccttcaaattcgaggcggaggagacaacgaccgtgcttgaa
gaggtcaactgggaagtcggccgcaccgggaagatcactccggtcgcgcgcgtcgagccg
gtggagctggccggcgtgaccgtccagaactgcaccttgaacaatgttggggacatcgag
cgcaaaaacttgaaacacgcccttggatcgcgcgtctttatccggcgttccaacgacgtc
atccctgagattctcggcaaagtgacggaggagcaggatggggaagagatcgtattcccg
acgcaatgcccgtcctgcggatcggagctggagatgcgcggggcccatttgttctgcaac
aacaagctgaactgcaagccgcagattgtcgggcgcatcgtgcacttcgcgtcccgggat
gcgatggacatcgagacattcagcatcatgacggccgagcagatttacaatgagctggat
gtccatgatccgtcggatctgtacacgctgacgttcgatcaactcgtcggactgaaccgg
ttcggagagaagaaggccaataatttgctccaggcgatcgaagcgagcaagacgcgtgac
ctgtccgcgtttctgttcgccctgggcattccgaatacggggaagacgacgacccgagcg
cttgcggagcatttcggcacgctggagggcgtcatgaatgcgacgcgggaggacctcatc
tccgttccggatgtcggagacatcgtcgcggacagcatcgtctcgttcttcgaggatgaa
gtcaacaagacgagcgtgaagcgcctgctcgaattcggcgtgcggccgcagccgatcgag
aagccgaagccggtcagcacggattccttcttctacggcaagacggtcgtcttgaccgga
acgctgcatctcatgtcgcgggaagaagcgaccgcgaagctggaggcgtgcggtgccaaa
gtaaccgggagcgtatccaagaagacggatcttgtcgtcgccggcgagaaggccggcagc
aagctcgccaaggccgagcagttgggcatccccgtcattaccgacgagaatgagctggtt
cgtctcctgcaagaggcaatgccagcggaataa
DBGET
integrated database retrieval system
