Phaeodactylum tricornutum: PHATRDRAFT_28568
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Entry
PHATRDRAFT_28568 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K15083
DNA repair protein RAD16
Organism
pti
Phaeodactylum tricornutum
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATRDRAFT_28568
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
PHATRDRAFT_28568
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-C3HC4_3
zf-C3HC4
Zn_ribbon_4
zf-RING_5
zf-RING_2
zf-C2HC_2
Zn_ribbon_5
DUF1178
zf_Rg
Motif
Other DBs
NCBI-GeneID:
7201976
NCBI-ProteinID:
XP_002181449
JGI:
28568
UniProt:
B7G2V4
LinkDB
All DBs
Position
12:complement(827192..830271)
Genome browser
AA seq
707 aa
AA seq
DB search
MYHQETQKPEIRGGILADEMGMVRLHEMDMCNVPPKMRPHKYAAARAGTLVVCPVIALHQ
WKTEIEKFTELDTLSVGIYHGPNRATDMPPELMQKYDVVLTTYQVLEQDFRKMMSPNKIS
CPNCGGKFKVDKLRVHLKYFCGDGAERTEAQARQHRARDRDENGSGRGNTNRGIGGARGK
KDKVKKPLTPTKKHLSTKTMVGSRFSVLHSFCWWRIILDEAHFIKSRSSQTAASAFSLSA
IHRWCLSGTPLQNRVGELYSLIRFLRIDPMAHYFCKAKGCDCKSIHYRIKDGKCQDCSHH
AFSHYAHFNRYVLNPIQRDGYSGDGRRAMFKLKNEVLDKSLLRRTKETRAEDMNLPPRLV
TIRPIRLHPVEQDFYDALYMNTKASFNDYVDEGTLLNNYAHIFDLLTKMRQAVDHPYMIV
HSKKNTEKRRLEQGAPVANGSVDCDICHESPTERVVSSCCGSGFCRECVVEYLTGAGGGS
TPCPSCQSPFSIDLNQASTEAPVDDGTLAYGHVPSGSILRRINLAEFATSSKIEVLVQEL
VAMRKGRPGSKALVFSQFVNMLDLTRWRIHSDPCLADLGLGVRILHGGMDVKSRDATLQA
FREDPSVRVLLMSLKAGGVALNLTVASEVYLLDNWWNPAAEMQAIDRTHRLGQYRPIRAV
RFIAEGTVEERVLQLQEKKRLVFDGTVGRDAGSLKMLTVHDMKALFT
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaccaagaaacgcaaaaaccagagattcgcggagggatcctagccgacgaaatg
ggaatggtacgcctgcacgaaatggacatgtgcaacgttccgcccaagatgcgtccccac
aagtatgccgcggctcgcgccggcaccctcgtggtctgtcccgtcattgccctgcatcag
tggaaaaccgagatcgaaaagtttaccgagctagataccctgtcggtgggcatatatcat
ggtccaaatcgggctacggatatgccacccgaactgatgcaaaaatacgatgttgtgctc
accacgtaccaggttttggaacaggattttcgcaaaatgatgtcgcccaataaaatcagc
tgtcccaattgtgggggcaagttcaaagtcgacaagctgcgagttcatctcaagtacttt
tgtggagatggcgctgagcgtaccgaagcgcaagcacgtcaacatcgtgcccgtgatcgg
gacgagaacggtagtggtcggggtaataccaatcgtggtattggtggtgcaaggggcaag
aaagataaggttaaaaagcctctgaccccaacaaagaagcatttgtccaccaagaccatg
gtgggttcgcgctttagtgtgctccacagcttctgttggtggcgaattatccttgacgag
gcccattttattaaatcacgatcgagtcaaactgccgcttctgcgttctcactgtcggct
attcatcgttggtgtctgtcgggaacgccactccagaaccgtgttggagaattgtactcg
ttgattcgctttctccgaatcgatcccatggcgcattacttctgcaaagcgaaaggatgc
gattgcaaatcaattcattaccgcatcaaagacggcaagtgccaggactgtagtcaccac
gccttttcacattacgcacattttaaccggtacgtcctgaatcctattcagcgagatggg
tacagcggtgacggacgtcgagctatgttcaaattgaagaacgaagttctcgacaaatcc
ttgctacgtagaacgaaagaaactcgggcagaagatatgaatttgccgccacgactggtg
acgattcgacccattcgtctacatccagtcgagcaagatttttacgatgctctctacatg
aacactaaggcttcctttaatgactacgttgatgaaggaaccttgctgaacaattatgcg
cacatcttcgatcttttgacaaaaatgcgccaagcggtcgatcatccgtacatgattgtt
cactctaaaaagaataccgagaagcggcgattggagcagggagctccagtcgcgaacgga
tcggtggactgtgatatctgtcatgaatctccaacggagcgtgtcgtcagctcttgttgc
ggttctggcttttgccgtgagtgtgtggttgaatacctcaccggcgccggtggtgggagc
accccgtgcccttcctgccaatcccccttttccatcgacctcaaccaggcgagtactgaa
gcaccagtggatgacggtacgctcgcgtatggtcatgttccttcgggttctattttacga
cggatcaatctagccgagttcgccacatcgtcgaagattgaggtcttggtccaagagctc
gttgctatgcgcaagggtcggccaggtagcaaagccctcgtgttctcccagttcgtcaac
atgctggacctcactcgctggcgcatccattccgatccctgcttagctgacttaggtctc
ggggttcgaatattgcacggtggaatggacgtcaagtctcgcgatgctacccttcaagca
ttccgagaagatccgagcgtccgagttttactcatgtcgctgaaggctggcggtgttgca
ctgaacttgaccgtcgcttcggaagtgtatctgttagataattggtggaatccagctgca
gaaatgcaggcaattgatcgtactcatcgtctcggacagtaccgtccaattcgcgctgtg
cgattcattgcggagggcactgtggaagagcgcgtgttgcaactgcaggaaaagaaaagg
ttggtgttcgacggtaccgtgggccgagatgctggctctttgaaaatgttgacggtacac
gatatgaaagccctttttacttga
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