KEGG   Phaeodactylum tricornutum: PHATRDRAFT_32559
Entry
PHATRDRAFT_32559  CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K12608  CCR4-NOT complex subunit CAF16
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHATRDRAFT_32559
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATRDRAFT_32559
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     PHATRDRAFT_32559
SSDB
Motif
Pfam: ABC_tran AAA_21 AAA_29 AAA_28 ORC-CDC6-like NACHT AAA_16 AAA_22 AAA_15 AAA_23 AAA_25 nSTAND3 RsgA_GTPase FtsK_SpoIIIE AAA_33 CLP1_P G-alpha
Other DBs
NCBI-GeneID: 7197110
NCBI-ProteinID: XP_002177582
JGI: 32559
UniProt: B7FS01
LinkDB
Position
2:244613..245698
AA seq 361 aa
MNGEATKPKPLPTIPPYGPNAIDIQNLTFTYLAGANGSSLSTPEDANLVLEKLNLNLGTG
SRCLLIGANGSGKSTLLRILAGRHLTKSMDPEGNPSATKVLGLNAFHDTRLNFHRAYLDC
DWGMRNVAFVGAAVPLMADIPVRNMMQKLQASYPERRDELLDMLGIDLDWRMHQLSDGQR
RRVQIFLGLVRPFQILLLDEITTSLDVCVRQDLLRWLVRESDNRGATIIYATHIFDGLDE
WATHLYYLNNRGQCGWQGKMQDLDVYQKLKAEAHPCKMLAIAEHWLRQEINEAKANNQKE
KAQGALAHQLDPTDNQGGFGSGRLKINPTAVEEPKQEQRQGRLSDMMGNSGVLDKVRRVG
N
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgaacggggaagcaacaaagccaaaacctctacctacgattccgccgtacggacccaat
gccatcgacattcagaaccttacctttacctacctcgccggtgccaacggtagcagtctc
tccactcccgaggacgcaaatctggttctggagaaactaaacctcaatctcggcacaggg
tcgcgatgcttgctgattggtgccaatggttccggaaaatcgactctgttgcgcattcta
gcgggtcggcatttgaccaaaagcatggatccagaaggcaacccgagtgcgaccaaagtg
ctcggcctgaatgcctttcacgacacacgtctcaactttcaccgcgcctatttggattgc
gattggggcatgcgcaacgtggcctttgtcggagccgccgtccccctcatggcggatatt
cccgtgcgcaatatgatgcaaaaattgcaagcttcgtatcccgaacgtcgcgacgaactc
ctcgatatgttggggattgatttggattggcggatgcatcagctttccgatggacaacgt
cgtcgagtgcaaatattcttaggactcgtccgtccgttccaaattctgctgttggacgaa
atcacgaccagcttggacgtctgcgtgcgtcaggacttactacgctggttggtgcgggag
tcggacaaccgtggggctaccattatttacgcaacacacatttttgatggactcgacgaa
tgggcgacacacttgtactacttgaacaaccgtggtcagtgtggttggcagggaaaaatg
caggatctggacgtctaccaaaaactcaaggcggaagctcacccgtgcaaaatgctggcg
atcgctgaacactggttgcgccaagaaatcaacgaagccaaggccaacaaccagaaggaa
aaggcacaaggggcactagcgcatcagttggacccgactgacaatcaaggtggtttcggc
agtggtcggctcaagatcaatccaacagcggtagaggaacccaaacaggagcagcggcag
ggacgcttgagtgatatgatgggaaacagcggagttttggacaaggtccgacgtgttgga
aactaa

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