KEGG   Phaeodactylum tricornutum: PHATRDRAFT_35063
Entry
PHATRDRAFT_35063  CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K11086  small nuclear ribonucleoprotein B and B'
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PHATRDRAFT_35063
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATRDRAFT_35063
   03041 Spliceosome [BR:pti03041]
    PHATRDRAFT_35063
   03032 DNA replication proteins [BR:pti03032]
    PHATRDRAFT_35063
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     PHATRDRAFT_35063
Spliceosome [BR:pti03041]
 Complex A
  U1 snRNP components
   Sm proteins
    PHATRDRAFT_35063
  U2 snRNP components
    PHATRDRAFT_35063
 Complex B
  U1 snRNP components
    PHATRDRAFT_35063
  U4/U6.U5 tri-snRNP components
    PHATRDRAFT_35063
 Complex C
  U2 snRNP components
    PHATRDRAFT_35063
DNA replication proteins [BR:pti03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     PHATRDRAFT_35063
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 7199999
NCBI-ProteinID: XP_002179554
JGI: 35063
UniProt: B7FXG6
LinkDB
Position
6:complement(988720..989399)
AA seq 165 aa
MPTGKGSKLLRYVEHRLRVTLHDGRSIVGTFLAFDKHLNLVLSEAEEFRTLKSKGGAALL
EERTEKRSLGLVLIRGENVVSLAVEGPPPPSTMGKLTPGGPGMARGAGRGVPSMAPPGAP
PVGLGAAPIHGIGGAGGTFPPPPPPPPGAGMPPPGMGRGMPPPRY
NT seq 498 nt   +upstreamnt  +downstreamnt
atgccaaccggaaagggaagtaagctattgcggtacgtcgagcaccgtctccgcgtaaca
cttcacgatggaaggtcaattgtgggaacctttcttgcgtttgacaagcacctaaatctc
gtcttatccgaagccgaagaattccgtacgttgaaatccaaaggtggcgccgctctgctg
gaagaacgaacggaaaaacgcagtttgggcttggtccttattcgcggagaaaacgtcgtt
agtttagccgtcgaaggcccaccgccaccgtcaacaatgggaaaactgacaccgggcggt
cccggtatggctcggggtgccggacgcggtgtaccttccatggccccacccggggctccg
ccggtagggctgggtgcggcgccaattcacgggattggtggtgccggaggaacatttccg
ccaccgccacccccaccaccgggcgcgggtatgccaccgcctggaatgggacgaggtatg
ccaccgccccgatactga

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