Phaeodactylum tricornutum: PHATRDRAFT_45463
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Entry
PHATRDRAFT_45463 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PHATRDRAFT_45463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATRDRAFT_45463
Enzymes [BR:
pti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PHATRDRAFT_45463
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
PHATRDRAFT_45463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_N
DNA_ligase_A_M
RNA_ligase
FG-GAP_2
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
7200566
NCBI-ProteinID:
XP_002179816
JGI:
45463
UniProt:
B7FXS5
LinkDB
All DBs
Position
7:complement(235521..241342)
Genome browser
AA seq
1307 aa
AA seq
DB search
MPNSIHLASREDARGDQDERHYFDGPLLDIEDDEYDVEDEPLAEVDNPTTDAGPKPSYME
PSYERASAVSFSRLSQQMEYLYRLKTQNVVHPPDKVSKLKRLLPPALISKISRPTKTSDP
PQSLFPILRLLLPERDGSRRIFTKENTLAKAYGRAFGLPPASTDYQKLLYYSDPHIVGSK
STGTGDFSEVLRQVLEKRISLQKNGSGVTVGQVNALLDELAVIGKPPTRSNHDWRNREAE
LNDFQLKPKNSASKAELQANWVTKLHCLGLTPLEHKWIIRIILERLQITLGSTVILAWYH
PLAPSFWSAHNSLKAVCNKLCQPGVFELRHNLAEDGGDDDEAPSTLAPYFKSTHLTHVQL
GNPFSPMASERTGFHTVLSDMSSRHRDFTGEERCYRYEAVIRSLAFKFPTFAIETKLDGE
RLLVHYFRNGTVKLHTRQGNWYSELYSPVLGPALRRAVGKHDLDLILDGEVLAWDNERHE
TVPFGNNRTIAKMRYSWMRKAGILDERDINLHNGENDVKRINSSNSWNTHNTRCDEVGEE
CWLQFIAFDVLYINGPHALDFLSKTVSSFALAKKQSGSIVDLECLERKKILYELIDEQDN
EVEIVPTVVVRPNGQTSPGHDYFRLSNPTMECGFPARDLDSIARMFHQPKNDLGTIDAQR
RHGLSDELMRKARAQAVESHYRKVVEDMRLEGLLFKDLSTPYILDKISRSFGYWRKFKPD
YFNGSVASDLDVVIIGAYFASGLRLSGKPSSFLCACTDSCDSEYYFPMCKVNAGSMDRNS
FSQLLYETGFRAPCDRPDPNAEESKMEYGRWFREEDHGKALPDFITDRSHQNNSRDGRWR
FRKEDYPDIWINPSDSCVLTLNAGDIVSSEAFPSGLTLRFPRIVKVRIGADTKDPTEVES
DRSLQKILQQVLKERCESKGEANGICSTKSFTRAKAQQFCRFLTEEEYVQGKNRKNSTGR
SKTLLLVPTSQQVMLSESKVLTGLSFHVLDGRYSIDSDDVAVDEATEEGWLEKALSVRSS
NDVKHFIARHNGKVLLNPDSSMFVIGGSETDARVITYIQAINRARTSLDRRTKETDRYRR
IAGSAGVLRWTFVFSFVQSHLGDADVSTSALMFNPTMLDFLKRAQIEAEELEFMADLSSK
SSLRRALGLTSKRKRTGSDSFFLGDWRERVFSCLPTMERCILSCRVQSVGPFKSVKADTP
SNVIPSVVCPVTVNDDTIESVLPLARMMGAVVVREPRKDLTHVVCHMIVHDIVKHKRGMS
LDLFENREQGTAFKRILDDLQIKHNLSHDILFVTPNWIRAQWPSHAR
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgcccaatagtatccaccttgcctctagggaagacgcaagaggagaccaggatgagaga
cactatttcgatggacctctattggatattgaggatgatgaatacgatgtagaggatgag
cccctcgctgaagtcgataatcctaccacggatgctggtcctaagccatcctacatggag
ccttcctacgaaagggccagcgccgtttcgttttcgcgtctgtctcaacaaatggagtat
ctttatcgactcaaaacacaaaatgtagtccatccaccagacaaggtctcaaaactaaaa
cgacttttaccgccggccttaatttcaaaaatctcacgccccaccaagaccagcgatccg
ccacaatctctgttccccattcttcgtctgctattacccgaacgagatggttcacgccga
attttcaccaaagaaaacacattggcaaaggcttacggtcgagcttttggattacctcca
gctagtaccgactaccagaaattgttgtattactccgatccacatatcgttggatccaag
tccactggaacaggggacttctctgaagttttgcggcaagttttggaaaaacgtatatca
cttcagaaaaatggatcaggtgtcacggtgggacaggtgaatgcactcctggatgagctg
gcggtaattgggaagccgccaacgagatctaatcatgactggagaaaccgcgaagctgag
ctgaacgacttccaattgaaacccaagaattcggcgtccaaagcagaactccaagcaaac
tgggtcactaagctgcattgtctcggcttaactccattagagcacaaatggattattcgt
atcatcttggagaggctacagattacgttgggctcgacggtcattcttgcatggtaccat
ccgctggccccgtcgttttggagcgcacacaacagtttaaaagccgtctgcaacaagctt
tgtcaacctggcgtctttgagttgcgtcacaacctcgctgaagatggcggagacgacgat
gaagcaccgtcaactttggcgccttatttcaaaagcactcatttgacacacgtgcaacta
ggtaatcctttttcgccaatggcttccgaacgaaccggatttcatactgtgttgtcagat
atgtcatctcggcatagagattttactggtgaagaaaggtgctacaggtatgaggcagtg
atcaggagcttggcgtttaaatttcctacgtttgcaatcgaaacaaaactagatggtgag
cgcctgctcgtgcattatttccgaaatgggaccgttaagcttcatactcggcaaggcaac
tggtacagtgaattgtattcgccggtacttgggccagctctccgtcgagcagtgggaaag
cacgatttggatctcattttagatggcgaagtgttagcatgggacaacgagcgccacgaa
actgttccttttggcaacaacagaacaattgcgaagatgcggtacagttggatgcgaaag
gctggaatactggatgagcgcgatatcaatctgcacaacggcgagaacgacgtcaagcgg
ataaactcatcgaattcatggaatactcacaacacacgctgtgacgaagtaggcgaggaa
tgttggctccagtttatcgctttcgatgtcctttatatcaatggtcctcacgcccttgat
tttttatcgaagaccgtctcatcttttgccttagcaaagaaacaaagtgggtctattgtt
gaccttgaatgccttgaaaggaaaaagattctatatgaattgattgacgagcaagataac
gaggtcgagatagtgccgacggtggtagtgcgaccaaacgggcaaacctctcccggacat
gattatttcagactctccaatcctacaatggaatgcggatttcctgctcgcgatttggat
tcaattgcacgaatgttccaccagcccaagaatgatctaggcacaatcgatgctcagaga
agacacggattgagtgacgaactaatgcgcaaggctcgagctcaggctgtagaaagccac
tatcgaaaagtcgttgaggacatgaggctagaaggcctccttttcaaggacttgtccact
ccatacattctcgacaaaatttctcgaagttttggatactggcgcaagttcaaacccgat
tatttcaatggatccgttgcaagcgatctcgatgttgtaattatcggcgcatactttgcc
tccggacttcgcctctccggcaaaccatcgagcttcctttgtgcatgtacagattcttgt
gattctgaatactattttcccatgtgcaaagtcaacgccggttctatggatagaaactcg
ttttctcaacttttgtacgaaactggcttccgcgcgccatgcgatcgacctgatccaaat
gcggaggagagcaagatggaatatggacgttggtttcgtgaggaggaccatggaaaagcg
cttcctgatttcattaccgatcggtctcatcagaacaatagccgggacggtagatggcgg
tttagaaaagaagactacccagacatatggatcaacccatctgactcatgtgttcttact
ttgaacgcgggagacatagtgagcagcgaggcgtttccatccggtcttaccctacgcttt
ccaagaattgttaaggtacgcataggtgcggatacgaaggatcccacagaagtcgaaagc
gatcggagtcttcaaaaaattttgcaacaagttttgaaagaaagatgtgaaagtaaaggt
gaagcgaatggaatctgctcaacgaaatcgttcaccagagccaaagcgcagcagttctgc
cgttttcttaccgaggaggagtatgtccagggaaagaatagaaaaaattctaccggccga
tcgaagacgcttctcctagtgcccacaagtcaacaggtgatgctttcagaaagcaaggtc
ctcactgggttgtcgttccatgtactggatggaaggtactcaatagattcggacgacgtc
gcagtcgatgaagcaacagaagagggctggctagaaaaagccttgtcagtcagaagcagc
aatgacgtcaaacactttatagcaagacacaacggaaaagtcttgctgaatccagattca
agcatgtttgtgataggaggcagtgaaactgatgcgcgcgttatcacatacatccaagct
attaatcgggcgagaacgtctctagacaggcggacgaaagaaactgacagatatcgtcga
attgctgggtccgccggtgtactgcggtggacgttcgttttttctttcgtccaaagtcat
ttaggagacgcggatgtatcaacaagtgctttaatgttcaaccctacaatgctcgacttt
cttaaaagagcgcaaattgaagcagaggaactggaatttatggctgatttgtcttccaaa
agctctcttcgtagggctttaggtttgacgtcgaaaagaaaacgaacgggatccgacagt
tttttcttaggtgattggagagagagggtattttcctgccttcctacgatggaacgttgt
attctatcttgccgcgtccaatcagtcggcccctttaaatcagtgaaggctgacactcca
tctaacgtcataccaagcgttgtctgtcctgtcactgttaatgacgacacgattgagtct
gtacttccgctcgctcgaatgatgggggctgttgtggtgcgagagccacgaaaagatctg
acccatgttgtctgtcatatgattgttcatgacatagttaaacacaaaagaggcatgtca
ctagatcttttcgaaaaccgagaacaaggtacagctttcaagagaatcctagatgatctt
caaatcaagcacaacttaagccatgatattctcttcgtaacgccaaattggatccgcgct
cagtggccaagtcacgcacgttga
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