Paenibacillus tianjinensis: JRJ22_26460
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Entry
JRJ22_26460 CDS
T07842
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptj
Paenibacillus tianjinensis
Pathway
ptj03030
DNA replication
ptj03410
Base excision repair
ptj03420
Nucleotide excision repair
ptj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JRJ22_26460 (ligA)
03410 Base excision repair
JRJ22_26460 (ligA)
03420 Nucleotide excision repair
JRJ22_26460 (ligA)
03430 Mismatch repair
JRJ22_26460 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptj03032
]
JRJ22_26460 (ligA)
03400 DNA repair and recombination proteins [BR:
ptj03400
]
JRJ22_26460 (ligA)
Enzymes [BR:
ptj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JRJ22_26460 (ligA)
DNA replication proteins [BR:
ptj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JRJ22_26460 (ligA)
DNA repair and recombination proteins [BR:
ptj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JRJ22_26460 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JRJ22_26460 (ligA)
MMR (mismatch excision repair)
DNA ligase
JRJ22_26460 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JRJ22_26460 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
DNA_ligase_ZBD
DUF669
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QSF44656
UniProt:
A0ABX7LBM0
LinkDB
All DBs
Position
complement(5671811..5673823)
Genome browser
AA seq
670 aa
AA seq
DB search
MDVMHTMEELVAELNQYNYHYYTLDAPQISDKEYDVLYDKLVQLEAESGIVLPDSPTQRV
GGELLKGFTPHRHLAPLWSLDKAQNIEQLRSWNARVLKLVNDYNTKNPETPLPEPCYAVE
LKFDGLTLNLTYRDGVLVQAATRGNGVTGEGILAQVKTIKSVPLTIPFKEGLIEVQGEGI
MNLSVLADYNTRAAEPLKNARNGAAGALRNLNPKTTAERRLNAFFYNVGYAEGVQFADHQ
EMMAFLRSNRFKVNPYLTYFDQFDEVTEQLAEIEASRSGLDYLIDGAVIKVTDFRIREAL
GYTDKFPRWAVAYKFEAEETTTILESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNN
VGDIERKNLKYALGTRVFIRRSNDVIPEILGKVTEESDGGEIIFPENCPACGFPLEMRGA
HLFCNNKLDCKPQIISRITHFASRDAMDIETFSEKTAGQLHEELGVREPADLYELTFEQL
VKLDRFGEKKADNLIKALEESKGRDLASFLYALGIPNTGKATTRMLAEHYRSLEAVMNAT
AEDLAGLPDIGGIVAESIVNFFADPFVATSINRMLNLGVEAKAPEAPRQVNTNSFFSGKT
VVLTGSLQKLTREEAAERLEALGAKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIEVIED
EEELIRLLEM
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggacgttatgcataccatggaagagctcgtggcagagctgaatcagtacaattaccac
tattacaccttggatgcgccgcagatcagcgacaaggaatatgatgttctatatgataag
ctggttcagcttgaagcagagagcggcattgtgctccctgattctccaacccagcgtgta
ggaggcgagctgctgaagggattcaccccgcaccggcatcttgcgcctttatggagcctg
gataaggcgcagaacatcgagcagctgcgtagctggaatgcccgggtgctgaagctggtg
aacgattataatacgaagaatcctgagacaccgctgccggagccttgctatgcggtagaa
ctgaaattcgacgggttgacccttaatctgacctatcgtgatggtgtgcttgtacaggct
gcaaccagaggtaacggggtgacgggtgaagggattctcgctcaggtgaagaccatcaaa
tcggttccgctcaccattcccttcaaggagggcctgattgaagtccagggtgaagggatc
atgaatctgtccgtgctggccgactacaatacccgtgcagccgagccgctgaagaatgcc
cgtaacggagccgcaggtgcactgcgcaatctgaatccgaagactacagcagagcgcagg
ctgaatgctttcttttataatgtgggttatgccgaaggggtacagtttgccgaccatcag
gagatgatggctttcctgcggagcaaccgtttcaaggtgaacccttatctcacctatttc
gatcagttcgatgaggttaccgagcagctggccgagattgaagcgagccgttccggcctt
gattatctgatcgatggtgcggttatcaaagtgaccgacttccggatccgcgaagcgctg
ggttacacggataagtttccacgctgggcagtggcctacaagttcgaggcggaagaaacg
acaaccattttggagtcggtcagctggaatgtaggccgtaccggcaaagtcactccgctt
gcgcgtgtagaggcagtcgaactggcaggtgttaccgtccagaactgtacacttaacaat
gtgggagatatcgaacgcaagaatcttaagtacgcgctggggacacgggtctttatccgg
cgctccaatgatgtcattccggaaattctcggcaaagtaaccgaagaaagtgacggcggg
gagatcatcttcccggaaaattgtcctgcctgcgggttcccgctggaaatgcgcggagcg
catctgttctgcaacaacaagctggactgtaaaccgcagattatcagccggattacccat
tttgcttcccgtgatgcaatggatattgagacgttcagcgagaagactgccggacagctg
catgaggaattaggtgtacgtgagccggctgatttatatgagctgaccttcgagcagctg
gtgaagctggaccgcttcggggagaagaaagcagataatctgatcaaagcgctggaggaa
agcaaggggcgtgatctcgcttcattcctgtacgctctgggtatcccgaataccggcaaa
gcgacaacccggatgctggccgagcattaccgcagtttggaagcagtaatgaatgcaacc
gcagaggatctggcgggtctgccggatatcggcggaattgtggctgagagcatcgtgaac
ttttttgcggatccgtttgtggccaccagcatcaaccgtatgctgaacctgggcgtagag
gctaaggctcctgaagccccgcgccaggtcaataccaactccttcttcagcggcaaaacg
gtcgtcttaaccggttcgctgcagaagctaacccgggaggaagcggctgaacgtctggag
gcactgggtgccaaggtatccggaagtgtctccaagaagacagacctggtcattgccggg
gaaaaggcgggcagtaagctggccaaggcacagcagctcggtatagaggttattgaggat
gaagaggaactgatccggctgcttgaaatgtaa
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