Pseudomonas tructae: EXN22_09650
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Entry
EXN22_09650 CDS
T07857
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptk
Pseudomonas tructae
Pathway
ptk03030
DNA replication
ptk03410
Base excision repair
ptk03420
Nucleotide excision repair
ptk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EXN22_09650 (ligA)
03410 Base excision repair
EXN22_09650 (ligA)
03420 Nucleotide excision repair
EXN22_09650 (ligA)
03430 Mismatch repair
EXN22_09650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptk03032
]
EXN22_09650 (ligA)
03400 DNA repair and recombination proteins [BR:
ptk03400
]
EXN22_09650 (ligA)
Enzymes [BR:
ptk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EXN22_09650 (ligA)
DNA replication proteins [BR:
ptk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EXN22_09650 (ligA)
DNA repair and recombination proteins [BR:
ptk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EXN22_09650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EXN22_09650 (ligA)
MMR (mismatch excision repair)
DNA ligase
EXN22_09650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EXN22_09650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QBF25950
UniProt:
A0A411MGW7
LinkDB
All DBs
Position
2080278..2082632
Genome browser
AA seq
784 aa
AA seq
DB search
MTAESRILELRTELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPDLVTADSPTQR
VGGSALSAFSQVRHEVPMLSLGNAFEESDLHEFDRRVVEGLDLPAGDLFGDGAAVDYSCE
PKLDGLAVSLLYRDGQLVQGATRGDGATGEDISVNVRTVRNIPLKLQGEGWPAVLEVRGE
VYMSKAGFERLNQTQIETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSAP
IADTHIDTLEQLKAWGMPISRELRHAAGVAECLAYYRDIGARRNDLPYEIDGVVFKVNSL
ASQRELGFRAREPRWAIAHKFPAMEELTRVLDVEFQVGRTGAVTPVARLKPVKVAGVTVS
NATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVMQVVSERRPEDARPVHIPTQCPVCGSQ
VERTQLVKRSKGKETVSEGAVYRCVGRLACAAQLKQAIIHYVSRRAMDIDGLGEKSVEQL
VDEGLIRSPADLYQLTFEQIVDLEGFAELSSKNLLAAIEASKNPGLARFIYALGIPDVGE
ETAKVLARSLGSLQRVMAALPQVLTYLPDIGLEVAHEIHSFFEDEHNRTVIAQLLERGLQ
LQDEGELGAEFAASTTLAGLIAKLDIPSVGPTGAQKLVAKLDSLEKIIAADGIDLRQALA
AKPAEAVRAFFQVPANVALALAIEAQLRDFGMHWSSEKKIAAGLPLAGQTWVLTGSLERM
SRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVGFLAGH
GIAV
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaatcccgaatccttgagctgcgcaccgaactcgaccagcacaactaccgc
tactacgtgcttgacgagccgagtgtgcctgacgccgaatacgatcgcctgttcaacgaa
ctcaaggccctggaagccgaacacccggacctggtgaccgctgactcgccgacccagcgc
gtcggtggctcggcgttgtcggcgttcagccaggtgcgtcatgaagtgccgatgctcagc
ctcggtaacgcctttgaagagagcgacctgcacgagttcgaccgtcgtgtggtcgagggc
ctggacctgccggccggtgacctgttcggtgatggcgccgctgtcgattacagttgcgaa
cccaagctcgacggcctggcggtcagcctgctgtaccgagacgggcaactggtgcagggt
gccacccgtggcgatggcgccaccggtgaagacatcagtgtcaacgtgcgtaccgtgcgc
aacataccgctgaagctgcaaggtgagggctggcctgctgtgcttgaagtgcgtggcgag
gtgtacatgtccaaggccggcttcgagcgcctgaaccagacgcagatcgaaaccggcggc
aagaccttcgccaacccgcgcaacgccgccgccggcagcctgcgccagctggactcgaag
atcaccgccagccgtccgctggagttctgctgctacggcgtaggccaggtctcggcgccg
attgccgacacccatatcgacaccctggagcagctcaaggcctggggcatgccgatcagc
cgcgagctgcgtcatgctgccggtgtcgccgagtgcctggcgtactaccgtgacatcggt
gcacggcgtaatgacctgccttacgagatcgatggtgtggtgttcaaggtcaacagcctg
gcttcccagcgtgagctgggcttccgtgcccgtgagccacgctgggcgattgcccacaag
ttcccggccatggaagagctgacccgggtgctggatgtcgagttccaggttggccgcact
ggcgcggtgacacctgtggcccggctcaagccggtcaaggtggcgggagtaacggtgtcc
aacgctaccctgcacaacatggatgaagtggcgcgcctgggcctgatgatcggtgacacc
gtgatcatccggcgtgccggtgatgttattccgcaggtcatgcaggtggtcagtgagcgt
cgtcccgaggatgcccgcccggtgcacatcccgacgcagtgcccggtgtgcggctcgcag
gtcgagcgcacccaactggtcaagcgcagcaaaggcaaggagaccgtcagcgaaggcgca
gtgtaccgctgtgttggccgcctggcctgcgctgcgcagctcaagcaggcgatcatccac
tatgtgtcgcgtcgcgccatggacattgacggccttggcgagaagagcgtcgagcagttg
gtcgatgaaggcctgatccgttcgccagccgacctctaccaactgactttcgagcaaatc
gtcgacctcgaggggtttgccgagctgtcgagcaagaacctgctggccgctatcgaggcc
agtaaaaatccgggcctggcgcgcttcatctacgccctgggcattcctgatgttggcgag
gaaaccgccaaggtgctggcccgctcgctgggctcgttgcagcgggtcatggcggccttg
ccgcaggtgctgacctacctgccggacatcggcctggaagtggcccacgagatccacagc
tttttcgaagacgaacacaaccgcacggtgattgcccagttgcttgagcgcggcctgcag
ttgcaggacgaaggcgagctgggcgccgagttcgcggccagcaccaccctggccgggctg
attgccaaactcgacatcccctcggtcgggccaaccggggcgcagaagctggtggccaag
ctcgacagcctggagaagatcattgccgccgacggcatcgacctgcgtcaggccctggcg
gccaaaccagccgaagcggtacgggctttcttccaggtgcctgcaaacgtggccctggcc
ctggcgatcgaagcgcaactgcgagacttcggtatgcactggtcgagcgagaagaagatc
gccgcaggtttgcccctggctggccagacctgggtgctgaccggttctctggagcgcatg
agccgcgatgtggccaaagacaagctggaaagcctcggtgccaaggtcgcaggctcggtg
tcggccaagacccactgcgtggtcgccggccccggtgccggctccaagctggccaaggcc
agtgagctggggttgaaggtgctcgatgaagaggccttcgtcggctttctggccgggcac
ggcatcgccgtgtaa
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