Parageobacillus thermoglucosidasius DSM 2542: AOT13_04790
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Entry
AOT13_04790 CDS
T04476
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptl
Parageobacillus thermoglucosidasius DSM 2542
Pathway
ptl03030
DNA replication
ptl03410
Base excision repair
ptl03420
Nucleotide excision repair
ptl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOT13_04790 (ligA)
03410 Base excision repair
AOT13_04790 (ligA)
03420 Nucleotide excision repair
AOT13_04790 (ligA)
03430 Mismatch repair
AOT13_04790 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptl03032
]
AOT13_04790 (ligA)
03400 DNA repair and recombination proteins [BR:
ptl03400
]
AOT13_04790 (ligA)
Enzymes [BR:
ptl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AOT13_04790 (ligA)
DNA replication proteins [BR:
ptl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AOT13_04790 (ligA)
DNA repair and recombination proteins [BR:
ptl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AOT13_04790 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOT13_04790 (ligA)
MMR (mismatch excision repair)
DNA ligase
AOT13_04790 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AOT13_04790 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
HHH_3
Zn_ribbon_NUD
HHH_8
Motif
Other DBs
NCBI-ProteinID:
ALF09384
UniProt:
A0AAN0YLQ4
LinkDB
All DBs
Position
964355..966367
Genome browser
AA seq
670 aa
AA seq
DB search
MERQAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTKDSP
SQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVRQEVGDDVAYVCELKIDGLA
VSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLPLRLNEPVTLEARGEAYMPKASFER
LNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELGIASHSAALD
YLQQLGFKTNPERRRCANMDEVMQFVNEWQEKRPQLPYEIDGIVIKVDSFAQQEQLGATA
KSPRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFI
REKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVMPTHCPECASELVRIEGEVAL
RCINPKCPAQIREGLIHFVSRQAMNIEGLGEKVISQLFREGLIHDVADIYRLTKDQLIDL
ERMGEKSATNLLHAIEASKQNSLERLLFGLGIRHVGAKAAKVLAEHFETMDRLQNATKEE
LMAIHEIGEKMADSIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTV
VLTGKLESLSRNEAKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDET
RFLEEIEQSK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaacgacaagctgcgatcaagcgaatcgaagagcttcgcgaacttttgaatcaatac
aattatgaatattatgtgcttgaccgtccatctgtgccggattcggaatacgaccggctt
atgcaagaacttatcgcgttagaagaacaatatccggatttaaaaacgaaagattctccg
tcgcaacgcgttggcggacaggcgttagacgcgtttcaaaaagtggaacatcgcacgccg
atgttaagtctcgcaaacgcatttaacgaaggggatttgcgcgattttgaccgccgtgtg
cgccaagaagtcggcgatgatgtcgcttatgtttgcgagctgaaaatcgatgggcttgct
gtatctgtccgttatgaagacggctatttcgttcaaggggcgacgcgcggcgacggagtg
accggagaggatattaccgaaaacttaaaaacgatccgctctttgccgcttcgcttgaat
gagccggtaacgttagaagcgcgcggcgaagcgtacatgccgaaagcgtcgtttgagcgg
ttgaacgaacagcgccgccagcgcggggaagagctgtttgccaatccgcgcaacgctgct
gcgggctctttgcgccagctcgatccgaaaatcgcggcatcgcgccatcttgatttattt
gtttatggtcttgcgaacgcggaagaattagggatcgcctcacatagcgcggcgctcgat
tatttgcagcagcttggatttaaaacaaatccggaacgccgccgctgcgctaatatggac
gaagtgatgcaatttgtgaatgaatggcaagaaaaacgtccgcagctgccttatgaaatt
gacgggattgtcataaaagtcgactcgtttgcgcaacaagaacaacttggcgcgacggcg
aaaagtccgcgctgggccatcgcttataaatttccggccgaggaagtggtaacgaagttg
attgacatcgagttaaatgtcgggcgcacgggagtggtgacgccgacagcgattttggag
ccggtgcgtgtggcgggtacaacggtgcaacgtgctacccttcataacgaggattttatt
cgtgagaaagatatccgcattggggattcggtcattatcaaaaaagcgggggacattatt
ccggaagtcgtgaatgtcgtgccggaccggcgtacgggagaagaagtgccgtttgtcatg
ccgacgcattgcccggaatgtgccagcgaattggtccggatcgaaggcgaagtagcgctc
cgctgcattaatccaaaatgtccggcgcaaattcgtgaaggattgattcacttcgtatcg
cgccaagcgatgaacatcgaggggcttggggaaaaggtgatttcccagctgttccgtgaa
ggcctcattcatgatgttgctgacatttatcgcttgacaaaggatcagcttatcgatttg
gaacggatgggagaaaaatcggcgaccaatttgctccatgccattgaagcttccaaacaa
aattcgttggagcgccttctcttcggactgggaattcgccatgtcggtgcaaaagcagcc
aaagtgttagcggaacatttcgaaacgatggaccgcctgcaaaacgcgacaaaagaagaa
ttaatggcgattcacgagatcggcgaaaaaatggccgattcgattgtcacatattttgcc
aagccggaagtaaaagagcttttaaatgaactgcgtgcttatggtgtcaatatggaatac
aaggggccgaaaacgccaaaacctggcgacgttcattcgtattttgccggaaaaaccgtt
gtattgacaggaaaactcgagtcattatcgcgcaatgaggcgaaagaaaaaattgaacag
cttggcggcaaagtgaccggcagcgtgagcaaaaatacggatttagtcattgctggggca
gacgcaggctcgaaactggcgaaagcgcagcagctccatatcgagatttgggatgagaca
agatttcttgaagaaattgaacaaagtaagtag
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