Planktomarina temperata: RCA23_c01020
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Entry
RCA23_c01020 CDS
T03229
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
ptp
Planktomarina temperata
Pathway
ptp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RCA23_c01020 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptp03400
]
RCA23_c01020 (nth)
Enzymes [BR:
ptp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RCA23_c01020 (nth)
DNA repair and recombination proteins [BR:
ptp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RCA23_c01020 (nth)
Prokaryotic type
RCA23_c01020 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
AII85671
UniProt:
A0AAN0RGA3
LinkDB
All DBs
Position
103461..104105
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AA seq
214 aa
AA seq
DB search
MAKQLPYPVMREIFSRFENSEPEPKGELNHVNAYTLVVAVALSAQATDKGVNKATEALFK
SVDTPQKMLDLGEDGLIAHIKTIGLYKTKARNVMKMAQILVEEFGGEVPNSRAALQSLPG
VGRKTANVVLNMWWQQPAQAVDTHIFRVGNRAGIAPGKTVDQVERAIEDNVPADFQLHAH
HWLILHGRYICVARKPKCRACIISDLCQFEEKTQ
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacaacttccttacccggtcatgcgcgaaatcttttcgcggtttgaaaacagc
gaacctgaaccaaagggggagcttaatcatgtgaatgcctacacgctcgtggtggccgtg
gcgctttcggcgcaggcgaccgataagggcgtcaacaaggccacagaggccctgttcaaa
tcagtagatacgccgcaaaaaatgctggatctgggcgaggacgggttgatcgcccatatc
aagaccatcggcctttacaaaaccaaagcccgcaatgtgatgaagatggcgcagattttg
gtggaagaatttggcggcgaggtgcccaattcgcgggctgccttgcaaagcctaccgggt
gttggacgcaaaactgcaaatgtcgtgttgaatatgtggtggcagcagccggcacaggcg
gtcgacacgcatattttccgggtgggaaaccgcgcaggcattgcgccgggcaaaacggtt
gatcaggtcgaacgggcaattgaagataatgtacctgcggattttcagttgcacgcacat
cattggctgatattgcatgggagatatatttgtgttgcgcgaaaacccaagtgccgcgcc
tgcattatcagtgatttatgccaatttgaggagaaaacccagtga
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