Planktomarina temperata: RCA23_c15320
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Entry
RCA23_c15320 CDS
T03229
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptp
Planktomarina temperata
Pathway
ptp03030
DNA replication
ptp03410
Base excision repair
ptp03420
Nucleotide excision repair
ptp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RCA23_c15320 (ligA)
03410 Base excision repair
RCA23_c15320 (ligA)
03420 Nucleotide excision repair
RCA23_c15320 (ligA)
03430 Mismatch repair
RCA23_c15320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptp03032
]
RCA23_c15320 (ligA)
03400 DNA repair and recombination proteins [BR:
ptp03400
]
RCA23_c15320 (ligA)
Enzymes [BR:
ptp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RCA23_c15320 (ligA)
DNA replication proteins [BR:
ptp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RCA23_c15320 (ligA)
DNA repair and recombination proteins [BR:
ptp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RCA23_c15320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RCA23_c15320 (ligA)
MMR (mismatch excision repair)
DNA ligase
RCA23_c15320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RCA23_c15320 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AII87070
UniProt:
A0AAN0VID8
LinkDB
All DBs
Position
1647766..1649886
Genome browser
AA seq
706 aa
AA seq
DB search
MAQNLPVSDMTEDQAALELQRLALTLAQANRAYHRDDHPSIDDATYDWLKLRNAQIEQKF
PHLKRTDSPSDQVGAKPKEGFGKIRHRKPMLSLSNAFDAEDVEDFVARLKKFLNLPPQSH
MRMTAEPKIDGLSLAVRYEKGQLVHAVTRGDGETGEDVTANALTIADIPKSLSGAPDVLE
VRGEVYMTHADFAALNAAQEQAGQKPFSNPRNAAAGSLRQLDAQITQARPLLFFAYAWGD
LSEPLAPSQSAAVARLHALGFSTNPLFKTCDTSEELINHYRAVELARSELGYDIDGMVYK
VDDLALQARLGFRATTPRWAIAHKFPAELAWTELLSIDIQVGRTGALSPVARLNPVTVGG
VVVSNATLHNEDYIAGRDSKGQGIRGGKDIRVGDWVQIYRAGDVIPKIADVDLSRRPADS
QPFDFADKLRQEGIEGRRAPGDAVWRYSGAEPLADLAIEALKHFVSRQAFDIEGLGAKQI
EQFYHRGWIRTPVDIFTLKARFGPGQLQQVSKLDGWGEKSAQKLFEGIDAKRRIELHRLI
FALGIRHVGEGAAKLLANRFVTWEAFSEAMRNAVAGSAAAEALVDIDGVGAVMAQSVVEP
FQNPARFAALQVLLEQLEVIPAPQIDSSSSPVAGKTVVFTGTLTQMTRAEAKARAETLGA
KVSGSVSAKTDILVAGPGAGSKAKKAAELGIETLDEEGWIALIEGL
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaaatctaccagtatcagacatgacagaggaccaagcagcccttgaattgcag
cgcttggcactgactttggcacaggctaatcgcgcctatcatcgcgatgaccacccgtcg
atagatgatgccacctacgattggctcaagctgcgcaacgcgcagattgaacaaaagttc
ccgcatctcaagcgcacagatagtccaagcgatcaagtcggggcaaaaccaaaggaaggc
tttggcaaaatccgtcatcgcaagccgatgttatccttgtcaaatgcctttgatgcggaa
gatgtggaggacttcgtcgcccggcttaaaaaattcttaaatcttcccccccaatcccac
atgcgcatgacggccgaacccaaaatcgacgggctgtcactggcggtgcgttatgagaaa
gggcagctggttcacgcagtgacgcgcggggatggcgaaaccggcgaagacgtcacagcc
aatgcgcttaccattgccgatattcccaagagtttgagcggggcgccagatgttctagag
gtgcgcggcgaagtctatatgacccatgcagattttgcagctctcaacgccgcacaagag
caggccgggcaaaagcccttttcgaacccacgcaatgccgccgcaggctctttgcgtcaa
ttggacgctcagatcacccaggcacgtcccttgttatttttcgcctatgcttggggcgat
ctatccgagcccttagcaccgagccaatcggcggcggtggcccgcctgcatgccttgggg
ttttccaccaacccccttttcaagacctgtgatacctccgaagagttgatcaaccattat
cgagcggttgaattggcccgttctgaactggggtatgatatcgacggcatggtctacaag
gtggatgatctggcgctgcaagcgcggcttgggttcagagccaccaccccccgctgggcc
atagcccataaattccctgcggaattggcctggactgaattgctcagcattgacattcaa
gttggccgcacaggggctttaagccctgtggcccgtctcaatccggtgaccgttggcggt
gtggtggtctccaatgccacattgcacaacgaagattatatcgccggacgtgacagcaaa
ggccaaggcatccgtggcggcaaggatattcgtgtcggcgattgggtgcaaatttaccgc
gccggcgatgtcattccgaaaatcgctgatgtggatctgtcgcgccgaccggccgatagc
cagccatttgatttcgcagataagcttagacaggagggcatcgagggtcggcgcgcgccg
ggcgatgccgtctggcggtactctggcgcagaacccctcgcggatttggccattgaagcg
ttgaagcattttgtctcgaggcaggcttttgacattgaaggtctcggggcgaaacagatt
gaacaattttaccatcggggctggattcgaacgccggtggatattttcaccctcaaggcc
cgtttcgggccgggacaattacagcaggtcagcaagctcgatggatggggcgaaaaatcc
gcgcaaaaactctttgagggcattgacgcgaagcgccgcattgagctgcaccgtttgatt
ttcgcccttgggatacggcatgtgggcgaaggtgcggccaagcttttggccaatcgtttc
gtcacttgggaggccttcagcgaagccatgcggaacgccgtggccggcagtgcagcggcg
gaagccttggtggatatcgatggggtgggcgcggttatggcccaatcagtggttgaaccg
tttcaaaatcccgcgcgttttgccgccttgcaggtgttgcttgagcaactcgaggtcatt
ccggcgccgcagattgacagctcaagcagcccagttgcaggcaagacagttgtttttaca
ggcaccttgacacagatgacccgagcagaggcaaaggcccgtgcggaaacgcttggtgcg
aaagtctccggctctgtcagtgccaagacagatattctagtggctggccccggcgctgga
tcaaaggcgaaaaaggcggcagaattgggaattgagacccttgatgaagagggctggatc
gcattgattgaagggctatga
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