Pan troglodytes (chimpanzee): 100611213
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Entry
100611213 CDS
T01005
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ptr
Pan troglodytes (chimpanzee)
Pathway
ptr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100611213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptr03019
]
100611213
Enzymes [BR:
ptr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100611213
Messenger RNA biogenesis [BR:
ptr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100611213
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100611213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
100611213
NCBI-ProteinID:
XP_054523533
LinkDB
All DBs
Position
16:complement(48025078..48026745)
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AA seq
488 aa
AA seq
DB search
MPKEKYDPPDPRRIYTIMSAEEVANGKKSHWAELEISGXLLLNNNLLRVLPYELGRLFQL
QTLGLKGNPLSQDILNLYQGPDGTRKLLNFMLDNLAVHPEQLPPRPWITLKERDQILPSA
SFTVMCYNVLCDKYDTRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYF
TLFLPALKEREYDRFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAM
ANSDGSEAMLNRVMTKDNIGVTVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEY
SDVKLIQTMMFVSEVKTILEKASSRSGSPTADPTSIPLVLCADLNSLPDSGVVEYLSNGG
IADNHKDFKELRYNECLMNFSCNGKNVSSEGRITHGFQLKSAYENTLMPYTNYTFDFKGV
IDYIFYSKTHLNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFLMLTQLELHPPLLPLVN
GVHLPNRR
NT seq
1466 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccagatcctcgcagaatttataccatcatgtcagca
gaggaggtagccaatgggaaaaaatctcactgggcagaattagaaatctcggggaattgc
ttttaaataacaatctgttacgggttttgccttatgaacttggtcggctcttccagctac
aaactctaggtttgaaaggcaatcctttatcacaggatattctcaacttataccagggcc
cagatggaacccgaaagctactgaacttcatgcttgacaatctggcagttcatccagagc
agcttcctccgaggccatggattacattaaaagaacgagaccaaattctgccatcagcat
cattcacggttatgtgttacaatgtgttatgtgataaatacgatacccggcagctatatg
gttattgcccatcctgggcattaaactgggaatacaggaaaaagggaattatggaagaaa
ttgttaactgtgacgcagatatcattagtcttcaggaagtggaaacagagcaatacttca
ctctctttctgccagcattgaaggagcgtgaatatgatagatttttttctccaaagtcac
gtgccaaaatcatgtctgagcaggagagaaagcatgtagatggttgtgcaatattcttca
aaacagaaaaatttacattggtgcagaagcatacagtggaatttaaccaagtggcaatgg
ctaattcagatggatccgaagctatgctgaacagagtgatgacaaaagataacattggtg
tcactgtggtattagaggtccacaaagaactatttggagcaggtatgaagcctattcatg
ctgcagacaaacagctgcttatagtggcaaatgcccacatgcattgggacccagagtatt
ctgatgtgaagctcatccagaccatgatgtttgtctcagaggttaaaaccattctggaga
aagcctctagtaggtctggcagcccaactgcagatcctacttccatcccgctggtgctat
gtgcagatcttaactcattgccagattcaggtgttgtggaatacttaagcaatggaggaa
tagctgacaaccataaagacttcaaggaactaaggtacaatgagtgtcttatgaacttca
gctgcaatggaaagaatgtaagctcagaagggagaatcacacatggcttccaacttaaga
gcgcctatgaaaataccttgatgccttacaccaattacacctttgatttcaaaggcgtga
ttgactacattttctattccaagactcatttgaacgtgcttggtgtcctggggcctttag
atcctcaatggctggttgagaacaacattactgggtgtccacaccctcatatcccttcag
accacttcttaatgttaacacaacttgaactccaccctccactcctgcctcttgtcaatg
gtgttcacttgcctaatcggaggtag
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