Pan troglodytes (chimpanzee): 129137559
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Entry
129137559 CDS
T01005
Name
(RefSeq) eukaryotic initiation factor 4A-III-like isoform X1
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ptr
Pan troglodytes (chimpanzee)
Pathway
ptr03013
Nucleocytoplasmic transport
ptr03015
mRNA surveillance pathway
ptr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129137559
09122 Translation
03013 Nucleocytoplasmic transport
129137559
03015 mRNA surveillance pathway
129137559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptr03019
]
129137559
03041 Spliceosome [BR:
ptr03041
]
129137559
03009 Ribosome biogenesis [BR:
ptr03009
]
129137559
03012 Translation factors [BR:
ptr03012
]
129137559
Enzymes [BR:
ptr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129137559
Messenger RNA biogenesis [BR:
ptr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129137559
mRNA cycle factors
Stress granule specific factors
129137559
Spliceosome [BR:
ptr03041
]
Complex C
Other components
EJC/TREX
129137559
Ribosome biogenesis [BR:
ptr03009
]
Eukaryotic type
90S particles
Helicases
129137559
Translation factors [BR:
ptr03012
]
Eukaryotic type
Initiation factors
eIF-4
129137559
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
129137559
NCBI-ProteinID:
XP_063655489
LinkDB
All DBs
Position
19:complement(93526056..93543802)
Genome browser
AA seq
438 aa
AA seq
DB search
MATTATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEK
PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATLSISVLQCLDIQLRETQALILAPTRELAV
QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRRLRTRA
IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRIL
VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA
NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL
SIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNDCLSHLKLKEKQAK
PKGSRRKEIIKMRVEINE
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccacggccacgatggcgacctcgggctcggcgcgaaagcggctgctcaaagag
gaagacatgactaaagtggaattcgagaccagcgaggaggtggatgtgacccccacgttc
gacaccatgggcctgcgggaggacctgctgcggggcatctacgcttacggttttgaaaaa
ccatcagcaatccagcaacgagcaatcaagcagatcatcaaagggagagatgtcatcgca
cagtctcagtccggcacaggaaaaacagccaccttgagtatctcagtcctccagtgtttg
gatattcagcttcgtgaaactcaagctttgatcttggctcccacaagagagttggctgtg
cagatccagaaggggctgcttgctctcggtgactacatgaatgtccagtgccatgcctgc
attggaggcaccaatgttggcgaggacatcaggaagctggattatggacagcatgttgtc
gcgggcactccagggcgtgtttttgatatgattcgtcgcagaaggctaaggacacgtgct
atcaaaatgttggttttggatgaagctgatgaaatgttgaataaaggtttcaaagagcag
atttacgatgtatacaggtacctgcctccagccacacaggtggttctcatcagtgccacg
ctgccacacgagattctggagatgaccaacaagttcatgaccgacccaatccgcatcttg
gtgaaacgtgatgaattgactctggaaggcatcaagcaatttttcgtggcagtggagagg
gaagagtggaaatttgacactctgtgtgacctctacgacacactgaccatcactcaggcg
gtcatcttctgcaacaccaaaagaaaggtggactggctgacggagaaaatgagggaagcc
aacttcaccgtatcctcgatgcatggagacatgccccagaaagagcgggagtccatcatg
aaggagttccggtcgggcgccagccgagtgcttatttctacagacgtctgggccagggga
ttggatgtccctcaggtgtccctcatcattaactacgatctccccaataacagagaattg
tccatacacagaattgggagatcaggtcgatatggccggaagggtgtggccattaacttt
gtaaagaatgacgacatccgcatcctcagagatatcgagcagtactattccactcagatt
gatgagatgccgatgaacgattgtctgtctcacctcaaactaaaagaaaagcaagctaaa
cccaaaggaagcagaagaaaggaaataataaagatgagagtagaaataaatgaatag
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