Pan troglodytes (chimpanzee): 451860
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Entry
451860 CDS
T01005
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X3
KO
K19719
collagen type II alpha
Organism
ptr
Pan troglodytes (chimpanzee)
Pathway
ptr04151
PI3K-Akt signaling pathway
ptr04510
Focal adhesion
ptr04512
ECM-receptor interaction
ptr04974
Protein digestion and absorption
ptr05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
451860 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
451860 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
451860 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
451860 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
451860 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ptr00536
]
451860 (COL2A1)
Glycosaminoglycan binding proteins [BR:
ptr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
451860 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
451860
NCBI-ProteinID:
XP_001161825
Ensembl:
ENSPTRG00000004871
VGNC:
10704
UniProt:
H2Q5S8
A0A6D2XVX7
LinkDB
All DBs
Position
12:41051166..41082931
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AA seq
1418 aa
AA seq
DB search
MIRLGALQTLVLLTLLVAAVLRCQGQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAG
EQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDE
KAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPG
KPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG
ESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG
APGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG
APGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEG
KRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG
RPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKG
ANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPG
PPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDG
PKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG
PIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKG
EQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPG
SNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEG
PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG
PAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRG
EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSG
DQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPG
PPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIESI
RSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGETCVYPNPA
NVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNI
TYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTV
IEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgattcgcctcggggctctccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcagggccaggatgtccggcaaccaggaccaaagggacagaaaggagaacct
ggagacatcaaggatattgtaggacccaaaggacctcctgggcctcagggacctgcaggg
gaacaaggacccagaggggatcgtggtgacaaaggtgaaaaaggtgcccctggacctcgt
ggcagagatggagaacctgggacccctggaaatcctggcccccctggtcctcccggcccc
cctggtccccctggtcttggtggaaactttgctgcccagatggctggaggatttgatgaa
aaggctggtggcgcccagttgggagtaatgcaaggaccaatgggccccatgggacctcga
ggacctccaggccctgcaggtgctcctgggcctcaaggatttcaaggcaatcctggtgaa
cctggtgaacctggtgtctctggtcccatgggtccccgtggtcctcctggtccccctgga
aagcctggtgatgatggtgaagctggaaaacctggaaaagctggtgaaaggggtccgcct
ggtcctcagggtgctcgtggtttcccaggaaccccaggccttcctggtgtcaaaggtcac
agaggttatccaggcctggacggtgctaagggagaggcgggtgctcctggtgtgaagggt
gagagtggttccccgggtgagaacggatctccgggcccaatgggtcctcgtggcctgcct
ggtgaaagaggacggactggccctgctggcgctgcgggtgcccgaggcaacgatggtcag
ccaggccccgcagggcctccgggtcctgtcggtcctgctggtggtcctggcttccctggt
gctcctggagccaagggtgaagccggccccactggtgcccgtggtcctgaaggtgctcaa
ggtcctcgcggtgaacctggtactcctgggtcccctgggcctgctggtgcctccggtaac
cctggaacagatggaattcctggagccaaaggatctgctggtgctcctggcattgctggt
gctcctggctttcctgggccacggggccctcctggccctcaaggtgcaactggtcctctg
ggcccgaaaggtcagacgggtgaacctggtattgctggcttcaaaggtgaacaaggcccc
aagggagaacctggccctgctggcccccagggagcccctggacccgctggtgaagaaggc
aagagaggtgcccgtggagagcctggtggcgttgggcccatcggtccccctggagaaaga
ggtgctcccggcaaccgcggtttcccaggtcaagatggtctggcaggtcccaagggagcc
cctggagagcgagggcccagtggtcttgctggccccaagggagccaacggtgaccctggc
cgtcctggagaacctggccttcctggagcccggggtctcactggccgccctggtgatgct
ggtcctcaaggcaaagttggcccttctggagcccctggtgaagacggtcgtcctggacct
ccaggtcctcagggggctcgtgggcagcctggtgtcatgggtttccctggccccaaaggt
gccaacggcgagcctggcaaagctggtgagaagggactgcctggtgctcctggtctgagg
ggtcttcctggcaaagatggtgagacaggtgctgcaggaccccctggccctgctggacct
gctggtgaacgaggcgagcagggtgctcctgggccatctgggttccagggacttcctggc
cctcctggtcccccaggtgaaggtggaaaaccaggtgaccagggtgttcccggtgaagct
ggagcccctggcctcgtgggtcccaggggtgaacgaggtttcccaggtgaacgtggctct
cccggtgcccagggcctccagggtccccgtggcctccccggcactcctggcactgatggt
cccaaaggtgcatctggcccagcaggcccccctggggctcagggccctccaggtcttcag
ggaatgcctggcgagaggggagcagctggtatcgctgggcccaaaggcgacaggggtgac
gttggtgagaaaggccctgagggagcccctggaaaggatggtggacgaggcctgacaggt
cccattggcccccctggcccagctggtgctaacggcgagaagggagaagttggacctcct
ggtcctgcaggaagtgctggtgctcgtggcgctccgggtgaacgtggagagactgggccc
cccggaccagcgggatttgctgggcctcctggtgctgatggccagcctggggccaagggt
gagcaaggagaggccggccagaaaggcgatgctggtgcccctggtcctcagggcccctct
ggagcacctgggcctcagggtcctactggagtgactggtcctaaaggagcccgaggtgcc
caaggccccccgggagccactggattccctggagctgctggccgcgttggacccccaggc
tccaatggcaaccctggaccccctggtccccctggtccttctggaaaagatggtcccaaa
ggtgctcgaggagacagcggtccccctggccgagctggtgaacccggcctccaaggtcct
gctggaccccctggcgagaagggagagcctggagatgacggtccctctggtgctgaaggt
ccaccaggtccccagggtctggctggtcagagaggcatcgtcggtctgcctgggcaacgt
ggtgagagaggattccctggcttgcctggcccatcgggtgagcccggcaagcagggtgct
cctggagcatctggagacagaggtcctcctggccccgtgggtcctcctggcctgacaggt
cctgcaggtgaacctggacgagagggaagccctggtgctgatggcccccctggcagagat
ggcgcggctggagtcaagggtgatcgtggtgagactggtgctgtgggagctcctggagcc
cctgggccccctggctcccctggccccgctggtccaactggcaagcaaggagacagagga
gaagctggtgcacaaggccccatgggaccctcaggaccagctggagcccggggaatccag
ggtcctcaaggccccagaggtgacaaaggagaggctggagagcctggcgagagaggcctg
aagggacaccgtggcttcactggtctgcagggtctgcccggccctcctggtccttctgga
gaccaaggtgcttctggtcctgctggtccttctggccctagaggtcctcctggccccgtc
ggtccctctggcaaagatggtgctaatggaatccctggccccattgggcctcctggtccc
cgtggacgatcaggcgaaaccggccctgctggtcctcctggaaatcctggaccccctggt
cctccaggtccccccggccctggcatcgacatgtccgcctttgctggcttaggcccgaga
gagaagggccccgaccccctgcagtacatgcgggccgaccaggcagccggtggcctgaga
cagcatgacgccgaggtggatgccacactcaagtccctcaacaatcagattgagagcatc
cgcagccccgagggctcccgcaagaaccctgctcgcacctgcagagacctgaaactctgc
caccctgagtggaagagtggagactactggattgaccccaaccaaggctgcaccttggac
gccatgaaggttttctgcaacatggagactggcgagacttgcgtctaccccaacccagca
aacgttcccaagaagaactggtggagcagcaagagcaaggagaagaaacacatctggttt
ggagaaaccatcaatggtggcttccatttcagctatggagatgacaatctggctcccaac
actgccaacgtccagatgaccttcctacgcctgctgtccacggaaggctcccagaacatc
acctaccactgcaagaacagcattgcctatctggacgaagcagctggcaacctcaagaag
gccctgctcatccagggctccaatgacgtggagatccgggcagagggcaatagcaggttc
acgtacactgccctgaaggatggctgcacgaaacacaccggtaagtggggcaagactgtt
atcgagtaccggtcacagaagacctcacgcctccccatcattgacattgcacccatggac
ataggagggcccgagcaggaattcggtgtggacatagggccggtctgcttcttgtaa
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