Pan troglodytes (chimpanzee): 451860
Help
Entry
451860 CDS
T01005
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
ptr
Pan troglodytes (chimpanzee)
Pathway
ptr04151
PI3K-Akt signaling pathway
ptr04510
Focal adhesion
ptr04512
ECM-receptor interaction
ptr04974
Protein digestion and absorption
ptr05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
451860 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
451860 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
451860 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
451860 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
451860 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ptr00536
]
451860 (COL2A1)
Glycosaminoglycan binding proteins [BR:
ptr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
451860 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
451860
NCBI-ProteinID:
XP_009423791
Ensembl:
ENSPTRG00000004871
VGNC:
10704
UniProt:
A0A2J8LQG5
LinkDB
All DBs
Position
10:47847975..47879745
Genome browser
AA seq
1488 aa
AA seq
DB search
MIRLGALQTLVLLTLLVAAVLRCQGQDVQEAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDVKDCLSPEIPFGECCPICPTDLATASGWQPGPKGQKGEPGDIKDIVGPK
GPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNF
AAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM
GPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK
GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPV
GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK
GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ
GAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA
GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQP
GVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAP
GPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR
GLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAP
GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPP
GADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFP
GAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEP
GDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPP
GPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPA
GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQ
GLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA
GPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATL
KSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMET
GETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLR
LLSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCT
KHTGKWGKTDIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgattcgcctcggggctctccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcagggccaggatgtccaggaggctggcagctgtgtgcaggatgggcagagg
tataatgataaggatgtttggaagccggagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacgtgaaagactgcctcagccctgagatc
cccttcggagagtgctgccccatctgcccaactgacctcgccactgccagtggttggcaa
ccaggaccaaagggacagaaaggagaacctggagacatcaaggatattgtaggacccaaa
ggacctcctgggcctcagggacctgcaggggaacaaggacccagaggggatcgtggtgac
aaaggtgaaaaaggtgcccctggacctcgtggcagagatggagaacctgggacccctgga
aatcctggcccccctggtcctcccggcccccctggtccccctggtcttggtggaaacttt
gctgcccagatggctggaggatttgatgaaaaggctggtggcgcccagttgggagtaatg
caaggaccaatgggccccatgggacctcgaggacctccaggccctgcaggtgctcctggg
cctcaaggatttcaaggcaatcctggtgaacctggtgaacctggtgtctctggtcccatg
ggtccccgtggtcctcctggtccccctggaaagcctggtgatgatggtgaagctggaaaa
cctggaaaagctggtgaaaggggtccgcctggtcctcagggtgctcgtggtttcccagga
accccaggccttcctggtgtcaaaggtcacagaggttatccaggcctggacggtgctaag
ggagaggcgggtgctcctggtgtgaagggtgagagtggttccccgggtgagaacggatct
ccgggcccaatgggtcctcgtggcctgcctggtgaaagaggacggactggccctgctggc
gctgcgggtgcccgaggcaacgatggtcagccaggccccgcagggcctccgggtcctgtc
ggtcctgctggtggtcctggcttccctggtgctcctggagccaagggtgaagccggcccc
actggtgcccgtggtcctgaaggtgctcaaggtcctcgcggtgaacctggtactcctggg
tcccctgggcctgctggtgcctccggtaaccctggaacagatggaattcctggagccaaa
ggatctgctggtgctcctggcattgctggtgctcctggctttcctgggccacggggccct
cctggccctcaaggtgcaactggtcctctgggcccgaaaggtcagacgggtgaacctggt
attgctggcttcaaaggtgaacaaggccccaagggagaacctggccctgctggcccccag
ggagcccctggacccgctggtgaagaaggcaagagaggtgcccgtggagagcctggtggc
gttgggcccatcggtccccctggagaaagaggtgctcccggcaaccgcggtttcccaggt
caagatggtctggcaggtcccaagggagcccctggagagcgagggcccagtggtcttgct
ggccccaagggagccaacggtgaccctggccgtcctggagaacctggccttcctggagcc
cggggtctcactggccgccctggtgatgctggtcctcaaggcaaagttggcccttctgga
gcccctggtgaagacggtcgtcctggacctccaggtcctcagggggctcgtgggcagcct
ggtgtcatgggtttccctggccccaaaggtgccaacggcgagcctggcaaagctggtgag
aagggactgcctggtgctcctggtctgaggggtcttcctggcaaagatggtgagacaggt
gctgcaggaccccctggccctgctggacctgctggtgaacgaggcgagcagggtgctcct
gggccatctgggttccagggacttcctggccctcctggtcccccaggtgaaggtggaaaa
ccaggtgaccagggtgttcccggtgaagctggagcccctggcctcgtgggtcccaggggt
gaacgaggtttcccaggtgaacgtggctctcccggtgcccagggcctccagggtccccgt
ggcctccccggcactcctggcactgatggtcccaaaggtgcatctggcccagcaggcccc
cctggggctcagggccctccaggtcttcagggaatgcctggcgagaggggagcagctggt
atcgctgggcccaaaggcgacaggggtgacgttggtgagaaaggccctgagggagcccct
ggaaaggatggtggacgaggcctgacaggtcccattggcccccctggcccagctggtgct
aacggcgagaagggagaagttggacctcctggtcctgcaggaagtgctggtgctcgtggc
gctccgggtgaacgtggagagactgggccccccggaccagcgggatttgctgggcctcct
ggtgctgatggccagcctggggccaagggtgagcaaggagaggccggccagaaaggcgat
gctggtgcccctggtcctcagggcccctctggagcacctgggcctcagggtcctactgga
gtgactggtcctaaaggagcccgaggtgcccaaggccccccgggagccactggattccct
ggagctgctggccgcgttggacccccaggctccaatggcaaccctggaccccctggtccc
cctggtccttctggaaaagatggtcccaaaggtgctcgaggagacagcggtccccctggc
cgagctggtgaacccggcctccaaggtcctgctggaccccctggcgagaagggagagcct
ggagatgacggtccctctggtgctgaaggtccaccaggtccccagggtctggctggtcag
agaggcatcgtcggtctgcctgggcaacgtggtgagagaggattccctggcttgcctggc
ccatcgggtgagcccggcaagcagggtgctcctggagcatctggagacagaggtcctcct
ggccccgtgggtcctcctggcctgacaggtcctgcaggtgaacctggacgagagggaagc
cctggtgctgatggcccccctggcagagatggcgcggctggagtcaagggtgatcgtggt
gagactggtgctgtgggagctcctggagcccctgggccccctggctcccctggccccgct
ggtccaactggcaagcaaggagacagaggagaagctggtgcacaaggccccatgggaccc
tcaggaccagctggagcccggggaatccagggtcctcaaggccccagaggtgacaaagga
gaggctggagagcctggcgagagaggcctgaagggacaccgtggcttcactggtctgcag
ggtctgcccggccctcctggtccttctggagaccaaggtgcttctggtcctgctggtcct
tctggccctagaggtcctcctggccccgtcggtccctctggcaaagatggtgctaatgga
atccctggccccattgggcctcctggtccccgtggacgatcaggcgaaaccggccctgct
ggtcctcctggaaatcctggaccccctggtcctccaggtccccccggccctggcatcgac
atgtccgcctttgctggcttaggcccgagagagaagggccccgaccccctgcagtacatg
cgggccgaccaggcagccggtggcctgagacagcatgacgccgaggtggatgccacactc
aagtccctcaacaatcagattgagagcatccgcagccccgagggctcccgcaagaaccct
gctcgcacctgcagagacctgaaactctgccaccctgagtggaagagtggagactactgg
attgaccccaaccaaggctgcaccttggacgccatgaaggttttctgcaacatggagact
ggcgagacttgcgtctaccccaacccagcaaacgttcccaagaagaactggtggagcagc
aagagcaaggagaagaaacacatctggtttggagaaaccatcaatggtggcttccatttc
agctatggagatgacaatctggctcccaacactgccaacgtccagatgaccttcctacgc
ctgctgtccacggaaggctcccagaacatcacctaccactgcaagaacagcattgcctat
ctggacgaagcagctggcaacctcaagaaggccctgctcatccagggctccaatgacgtg
gagatccgggcagagggcaatagcaggttcacgtacactgccctgaaggatggctgcacg
aaacacaccggtaagtggggcaagactgatatcgagtaccggtcacagaagacctcacgc
ctccccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgtg
gacatagggccggtctgcttcttgtaa
DBGET
integrated database retrieval system
