Pan troglodytes (chimpanzee): 454178
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Entry
454178 CDS
T01005
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X2
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ptr
Pan troglodytes (chimpanzee)
Pathway
ptr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
454178 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptr03019
]
454178 (EDC4)
Messenger RNA biogenesis [BR:
ptr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
454178 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
454178 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
DUF445
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_HPS5
WDR55
EIF3I
Motif
Other DBs
NCBI-GeneID:
454178
NCBI-ProteinID:
XP_003315200
Ensembl:
ENSPTRG00000008249
VGNC:
5754
UniProt:
H2R199
A0A6D2Y2J3
LinkDB
All DBs
Position
18:65915800..65927319
Genome browser
AA seq
1401 aa
AA seq
DB search
MAYCASIDIEDATQHLRDILKLDRPAGGPSAESPRPSSAYNGDLNGLLVPDPLCSGDGTS
ANKTGLRTMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHSTWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPDVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGHACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGADGIHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTA
HEDFTFGESRPELGSEGLGSAAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFMT
PSASLQQITASPSSSSSGSSSSSSSSSSSLTAVSAMSSTSAVDPSLTRPPEELTLSPKLQ
LDGSLTMSSSGSLQASPRGLLPGLLPAPADKLTPKGPGQVPTAASALSLELQEVEPLGLP
QASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEGLEPDSMASAASALHLLS
PRPRPGPELGPQLGLDGGPGDGDRHNTPSLLEAALTQEASTPDSQVWPTAPDITRETCST
LAESPRNGLQEKHKSLAFHRPPYHLLQQRDSQDASAEQSDHDDEVASLASASGGFGTKVP
APRLPAKDWKTKGSPRTSPKLKRKSKKDDGDAAMGSRLTEHQVAEPPEDWPALIWQQQRE
LAELRHSQEELLQRLCTQLEGLQSTVTGHVERALETRHEQEQRRLERALAEGQQRGGQLQ
EQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPMAGQLSNSVATKLTAVEGS
MKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINDS
FRLGTQEYLQQLESHMKSRKAREQEAREPLLAQLRGLVSTLQSATEQMAATVAGSVRAEV
QHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPSAHLD
CQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQPVLLS
LIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHNS
LGKAARRLSLMLHGLVTPSLP
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggcctactgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatcctc
aagctggaccggcccgcgggcggccccagtgcagagagcccacggccatccagtgcctac
aatggggacctcaatggacttctggtcccagacccgctctgctcaggtgatggtacctca
gcaaacaagactggtcttcggaccatgccacccattaacctgcaagagaagcaggtcatc
tgtctctcaggagatgatagctccacctgcattgggattttggccaaagaggtggagatt
gtggctagcagtgactctagcatttcaagcaaggcccggggaagcaacaaggtaaaaatt
cagcctgtcgccaagtatgactgggaacagaagtactactatggcaacctgattgctgtg
tctaactccttcttggcctatgccattcgggctgccaacaatggctctgccatggtgcgg
gtgatcagcgtcagcacttcggagcggaccttgctcaagggcttcacaggcagtgtggct
gatctggctttcgcgcacctcaactctccacagctggcctgcctggatgaggcaggcaac
ctgttcgtgtggcgcttggctctggttaatggcaaaattcaagaagagatcttggtccat
attcggcagccagagggcacgccactgaaccactttcgcaggatcatctggtgccccttc
atccctgaggagagcgaagactgctgcgaggagagcagcccgacagtggccctgctgcat
gaagaccgggctgaggtgtgggacctggacatgctccgctccagccacagtacctggcct
gtggatgtcagccagatcaagcagggcttcattgtggtaaaaggtcatagcacgtgcctc
agtgaaggagccctctctcctgatgggactgtgctggctactgcgagccacgatggctat
gtcaagttctggcagatctacattgaggggcaagatgagccaaggtgtctgcacgagtgg
aaacctcatgatgggcggcccctctcctgcctcctgttctgtgacaaccataagaaacaa
gatcctgatgtccctttctggaggttccttattactggtgctgaccagaaccgagagtta
aagatgtggtgtacagtatcctggacttgcctgcagactattcgcttctccccagatatc
ttcagttcagtgagtgtgccccctagcctcaaggtttgcttggacctctcagcagaatac
ctgattctcagcgatgtgcaacggaaggtcctctatgtgatggagctgctgcaaaaccag
gaggagggccacgcctgcttcagctccatctcggagttcctgctcacccaccctgtgctg
agctttggtatccaggttgtgagtcgctgccggctacggcacactgaggtgctgcctgcc
gaagaggaaaatgacagcctgggtgctgatggtatccatggagccggtgccatggagtct
gcggctggtgtgctcatcaagctcttttgtgtgcatactaaggcactgcaagatgtgcag
atccgcttccagccacagctgaaccctgatgtggtggccccactgcccacccacactgcc
catgaggactttacatttggagagtctcggcccgaactgggctctgagggcctggggtca
gccgctcacggctcccagcctgacctccgacgaattgtggagctgcctgcacccgccgac
ttcctcagtctgagcagtgagaccaagcccaagttgatgacacctgacgccttcatgaca
cctagcgcctccttgcagcagatcactgcctctcccagcagcagcagcagcggtagcagc
agcagcagcagcagtagcagcagctcccttacagctgtgtctgccatgagcagcacctca
gctgtggacccctccttgaccaggccacctgaggagctgaccttgagccccaagctgcag
ctggatggcagcctgacaatgagcagcagtggcagccttcaggcaagcccgcgtggcctc
ctgcctggcctgctcccagccccagctgacaaactgactcccaaggggccgggccaggtg
cctactgccgcctctgcactgtccctggagctgcaggaagtggagcccctggggctaccc
caagcctcccctagccgcactcgttcccctgatgtcatctcctcagcttccactgccctg
tcccaggacatccctgagattgcatctgaggccctgtcccgtggttttggctcctctgca
ccagagggccttgagccagacagtatggcttcagccgcctcagcactgcacctgctgtcc
ccacggccccggccagggcccgagctcggcccccagcttgggcttgatggaggccctggg
gatggagatcggcataataccccctccctcctggaggcagccttgacccaggaggcctcg
actcctgacagtcaggtttggcccacagcacctgacattactcgtgagacctgcagcacc
ctggcagaaagccccaggaatggccttcaagaaaagcacaagagcctggccttccaccga
ccaccataccacctgctgcagcaacgtgacagccaggatgccagtgctgagcaaagtgac
catgatgatgaggtggccagccttgcctctgcttcaggaggctttggcaccaaagttcct
gctccacggctgcctgccaaggactggaagaccaagggatcccctcgaacctcacccaag
ctcaagaggaaaagcaagaaggatgatggggatgcagccatgggatcccggctcacagag
caccaggtggcagagccccctgaggactggccagcactaatttggcaacagcagagagag
ctggcagagctgcggcacagccaggaagagctgctgcagcgtctgtgtacccaactcgaa
ggcctgcagagcacagtcacaggccacgtagaacgtgcccttgagacccggcacgagcag
gaacagcggcggctggagcgagcactggctgaggggcagcagcggggagggcagctgcag
gagcagctgacacaacagttgtcccaagcactgtcttcagctgtagctgggcggctagag
cgcagcatacgggatgagatcaagaagacagtccctccatgtgtctcaaggagtctggag
cctatggcaggccaactgagcaactcagtggctaccaagctcacagctgtggagggcagc
atgaaagagaacatctccaagctgctcaagtccaagaacttgactgatgccatcgcccga
gcagctgcagacacattacaagggccgatgcaggctgcctaccgggaagccttccagagt
gtggtgctgccggcctttgagaagagctgccaggccatgttccagcaaatcaatgatagc
ttccggctggggacacaggaatacttgcagcagctagaaagccacatgaagagccggaag
gcacgggaacaggaggccagggagcctctgctagcccagctgcggggcctggtcagcaca
ctgcagagtgctactgagcagatggcagccaccgtggccggcagtgttcgtgctgaggtg
cagcaccagctgcatgtggctgtgggcagcctgcaggagtccattttagcacaggtacag
cgcatcgttaagggtgaggtgagtgtggcgctcaaggagcagcaggccgccgtcacctcc
agcatcatgcaggccatgcgctcagctgctggcacacctgtcccctctgcccaccttgac
tgccaggcccagcaagcccatatcctgcagctgctgcagcagggccacctcaatcaggcc
ttccagcaggcgctgacagctgctgacctgaacctggtgctgtatgtgtgtgaaactgtg
gacccagcccaggtttttgggcagccaccctgcccgctctcccagcctgtgctcctttcc
ctcatccagcagctggcatctgaccttggcactcgaactgacctcaagctcagctacctg
gaagaggccgtgatgcacctggaccacagtgaccccatcactcgggaccacatgggctct
gttatggcccaggtgcgccaaaagctttttcagttcctgcaggctgagccacacaactca
cttggcaaagcagctcggcgtctcagcctcatgctgcatggcctcgtgacccccagcctc
ccttag
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integrated database retrieval system
