Pan troglodytes (chimpanzee): 457572
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Entry
457572 CDS
T01005
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X3
KO
K14409
protein SMG7
Organism
ptr
Pan troglodytes (chimpanzee)
Pathway
ptr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
457572 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptr03019
]
457572 (SMG7)
Messenger RNA biogenesis [BR:
ptr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
457572 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
457572 (SMG7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
457572
NCBI-ProteinID:
XP_016789381
Ensembl:
ENSPTRG00000001764
VGNC:
1556
UniProt:
K7BUG0
LinkDB
All DBs
Position
1:complement(65541113..65623943)
Genome browser
AA seq
1187 aa
AA seq
DB search
MSLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHVTVI
NLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYP
LPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSISATPLPEEFE
LQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEV
GKLLFITEIPELILEDPSEAKENLILQETSVIESLAADGSPGLKSVLSTSRNLSNNCDTG
EKPVVTFKENIKPREVNRDQGRSFPPKEVRRDYSKGITVTKNDGKKDNNKRKTETKKCTL
EKLQETGKQNVAVQVKSQTELRKTPVSEARKTPVTQTPTQASNSQFIPIHHPGAFPPLPS
RPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQPTAHSPAGNQVQAGKQSHIPYSQ
QRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQSTSQLQVQALTQQQQSPTKAVPALGK
SPPHHSGFQQYQQADASKQLWNPPQVQGPLGKIMPVKQPYYLQTQDPIKLFEPSLQPPVM
QQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNRSVMAQQANIDRRGKRSPGV
FRPEQDPVPRMPFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGPLASLPG
RSLFKSLLEKPSELMSHSSSFLSLTGFSLNQERYPNNSMFNEVYGKNLTSSSKAELSPSM
APQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVPFSNFG
PIGTPDNRDRRTADRWKTDKPAMGGFGIDYLSATSSSESSWHQASTPSGTWTGHGPSMED
SSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGTMNPPH
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcagagcgcgcagtacctccggcaggcagaagtcctgaaggctgacatgaca
gattctaagctgggtccagctgaagtctggacatccaggcaggctctgcaggacctgtac
cagaaaatgctagttaccgatttggaatacgctttagacaagaaagtagaacaggatctc
tggaatcacgcctttaagaatcagatcacaacactacaaggccaggcaaagaatcgagca
aatccgaatcggagtgaagttcaggcaaacctttctctgttcctagaggcagctagtggc
ttctatactcagttattacaagaactgtgtacagtatttaatgtagatttaccatgccgt
gtgaagtcttcccaattgggaattatcagcaataaacagacgcataccagcgccatagtg
aagccacagtctagctcctgttcctatatctgccagcactgcctcgtccaccttggagac
attgctcgatacagaaaccagaccagccaggcagagtcctactataggcatgcagctcag
cttgtcccctccaatggtcagccttataatcagttggctatcttagcttcttccaaagga
gaccatctgaccacaattttctactactgcagaagcattgctgtgaagttccctttccca
gctgcctccactaatctgcaaaaagcactttctaaagcactggaaagccgagatgaggtg
aaaaccaagtggggtgtttctgacttcatcaaggcctttattaaattccacggtcatgtg
tacctgagtaagagcttggaaaagttgagccctcttcgagagaaattggaagaacagttt
aagaggctgctattccaaaaagctttcaactctcagcagttagttcatgtcactgtcatt
aacctgtttcaacttcatcaccttcgtgactttagcaatgaaaccgagcagcacagttat
agccaagatgagcagctatgttggacacagttgctggccctctttatgtcttttcttggc
atcctgtgcaagtgtcctctacagaatgagtctcaggaggagtcctacaatgcctatcct
cttccagcagtcaaggtctccatggactggctaagactcagacccagggtctttcaggag
gcagtggtggatgaaagacagtacatttggccctggttgatttctcttctgaatagtttc
catccccatgaagaggacctctcaagtattagtgcgacaccacttccagaggagtttgaa
ttacaaggatttttggcattgagaccttctttcaggaacttggatttttccaaaggtcac
cagggtattacaggggacaaagaaggccagcaacgacgaatacgacagcaacgcttgatc
tctataggcaaatggattgctgataatcagccaaggctgattcagtgtgaaaatgaggta
gggaaattgttgtttatcacagaaatcccagaattaatactggaagaccccagtgaagcc
aaagagaacctcattctgcaagaaacatctgtgatagagtcgctggctgcagatgggagc
ccagggctaaaatcagtgctatctacaagccgaaatttaagcaacaactgtgacacagga
gagaagccagtggttaccttcaaagaaaacattaagccacgagaagtgaacagagaccaa
ggaagaagttttcctcccaaagaggtgagaagggactatagcaaaggaataactgtaact
aagaatgatggaaagaaggacaacaacaagaggaaaactgaaaccaagaaatgcacctta
gaaaagttacaggaaacaggaaagcagaatgtggcagtgcaggtaaaatcccagacagaa
ctaagaaagactccagtgtctgaagccagaaaaacacctgtaactcaaaccccaactcaa
gcaagtaactcccagttcatccccattcatcaccctggagccttccctcctcttcccagc
aggccagggtttccgcccccaacatatgttatccccccgcctgtggcattttctatgggc
tcaggttacaccttcccagctggtgtttctgtcccaggaacctttcttcagcctacagct
cactctccagcaggaaaccaggtgcaagctgggaaacagtcccacattccttacagccag
caacggccctctggaccagggccaatgaaccagggacctcaacaatcacagccaccttcc
cagcaaccccttacatctttaccagctcagccaacagcacagtctacaagccagctgcag
gttcaagctctaactcagcaacaacaatcccctacaaaagctgtgccggctttggggaaa
agcccgcctcaccactctggattccagcagtatcaacaggcagatgcctccaaacagctg
tggaatccccctcaggttcaaggcccattagggaaaattatgcctgtgaaacagccctac
taccttcagacccaagaccccataaaactgtttgagccgtcattgcaacctcctgtaatg
cagcagcagcctctagaaaaaaaaatgaagccttttcccatggagccatataaccataat
ccctcagaagtcaaggtcccagaattctactgggattcttcctacagcatggctgataac
agatctgtaatggcacagcaagcaaatatagaccgcaggggcaaacggtcaccaggagtc
ttccgtccagagcaggatcctgtacccaggatgccgtttgaggaccccaagagctcccct
ctgcttcctccggacctgttaaagagtctggctgccttggaggaagaggaagagctgatt
ttttctaaccctcctgatctttacccggctctgctggggcctctcgcctctcttcctgga
cgaagcctttttaaatccttattggagaagccctcagagctcatgtcacattcatcctct
ttcctgtccctcaccggattctctctcaatcaggaaagatacccaaataatagtatgttc
aatgaggtatatgggaaaaacctgacatccagctccaaagcagaactcagtccctcaatg
gccccccaggaaacatctctgtattccctttttgaagggactccgtggtctccatcactt
cctgccagttcagatcattcaacaccagccagccagtctcctcattcctctaacccaagc
agcctgcccagctctcctccaacacacaaccataattctgttccattctccaattttgga
cccattgggactccagataacagggatagaaggactgcagatcggtggaaaactgataag
ccagccatgggtgggtttggcattgattatctctcagcaacgtcatcctctgagagcagt
tggcatcaggccagcactccgagtggcacctggacaggccatggcccctccatggaggat
tcctctgctgtcctcatggaaagcctaaagtctatctggtccagttccatgatgcatcct
ggaccttctgctctggagcagctgttaatgcagcagaagcagaaacagcaacggggacaa
ggcaccatgaaccctccacactga
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integrated database retrieval system
