Pan troglodytes (chimpanzee): 459703
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Entry
459703 CDS
T01005
Symbol
SCN1A
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X3
KO
K04833
voltage-gated sodium channel type I alpha
Organism
ptr
Pan troglodytes (chimpanzee)
Pathway
ptr04728
Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09150 Organismal Systems
09156 Nervous system
04728 Dopaminergic synapse
459703 (SCN1A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ptr04040
]
459703 (SCN1A)
Ion channels [BR:
ptr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
459703 (SCN1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
New_glue
PFF1_TM
FUT8_N_cat
FraC
Motif
Other DBs
NCBI-GeneID:
459703
NCBI-ProteinID:
XP_024210474
Ensembl:
ENSPTRG00000012595
VGNC:
14353
LinkDB
All DBs
Position
13:complement(68011008..68150925)
Genome browser
AA seq
1998 aa
AA seq
DB search
MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKN
LPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCIQWPPTNASLEEHSIEKNITVNY
NGTLINETVFEFDWKSYIQDSRYHYFLEGFLDALLCGNSSDAGQCPEGYMCVKAGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMIEQLKKQQEAAQQAATATASEHSREPSAAGRLS
DSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFPKSESEDSIRRKGFRFSIEG
NRLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFED
NESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVP
TSPVGQLLPEGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASILTNTVEELEESR
QKCPPCWYKFSNIFLIWDCSPYWLKVKHVVNLVVMDPFVDLAITICIVLNTLFMAMEHYP
MTDHFNNVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVTLSLVELGLAN
VEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQL
FGKSYKDCVCKIASDCQLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLTV
FMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMHKGVAYVKRKIY
EFIQQSFIRKQKILDEIKPLDDLNNKKDSCMSNHTTEIGKDLDYLKDVNGTTSGIGTGSS
VEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEESKEKLNESSSS
SEGSTVDIGAPAEEQPVVEPEETLEPEACFTEGCVQRFKCCQINVEEGRGKQWWNLRRTC
FRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFTYIFILEMLLKW
VAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFE
GMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINTTTGDRFDIEDVN
NHTDCLKLIERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYAAVDSRNVELQP
KYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAM
KKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMVETDDQSEYVTT
ILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMFLAELIEKYFVS
PTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSN
FAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPDCDPNKVNPGSS
VKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEV
WEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGDRIHCLDILFAF
TKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAVIIQRAYRRHLL
KRTVKQASFTYNKNKIKGGANLLIKEDMIIDRINENSITEKTDLTMSTAACPPSYDRVTK
PIVEKHEQEGKDEKAKGK
NT seq
5997 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaacagtgcttgtaccaccaggacctgacagcttcaacttcttcaccagagaa
tctcttgcggctattgaaagacgcattgcagaagaaaaggcaaagaatcccaaaccagac
aaaaaagatgacgacgaaaatggcccaaagccaaatagtgacttggaagctggaaagaac
cttccatttatttatggagacattcctccagagatggtgtcagagcccctggaggacctg
gacccctactatatcaataagaaaacttttatagtattgaataaagggaaggccatcttc
cggttcagtgccacctctgccctgtacattttaactcccttcaatcctcttaggaaaata
gctattaagattttggtacattcattattcagcatgctaattatgtgcactattttgaca
aactgtgtgtttatgacaatgagtaaccctcctgattggacaaagaatgtagaatacacc
ttcacaggaatatatacttttgaatcacttataaaaattattgcaaggggattctgttta
gaagattttactttccttcgggatccatggaactggctcgatttcactgtcattacattt
gcgtacgtcacagagtttgtggacctgggcaatgtctcggcattgagaacattcagagtt
ctccgagcattgaagactatttcagtcattccaggcctgaaaaccattgtgggggccctg
atccagtctgtgaagaagctctcagatgtaatgatcctgactgtgttctgtctgagcgta
tttgctctaattgggctgcagctgttcatgggcaacctgaggaataaatgtatacaatgg
cctcccaccaatgcttccttggaggaacatagtatagaaaagaatataactgtgaattat
aatggtacacttataaatgaaactgtctttgagtttgactggaagtcatatattcaagat
tcaagatatcattatttcctggagggttttttagatgcactactatgtggaaatagctct
gatgcaggccaatgtccagagggatatatgtgtgtgaaagctggtagaaatcccaattat
ggctacacaagctttgataccttcagttgggcttttttgtccttgtttcgactaatgact
caggacttctgggaaaatctttatcaactgacattacgtgctgctgggaaaacgtacatg
atattttttgtgttggtcattttcttgggctcattctacctaataaatttgatcctggct
gtggtggccatggcctatgaggaacagaatcaggccaccttggaagaagcagaacagaaa
gaggccgaatttcagcagatgatcgaacagcttaaaaagcaacaggaggcagctcagcag
gcagcaacggcaactgcctcagaacattccagagagcccagtgcagcaggcaggctctca
gacagctcatctgaagcctctaagttgagttccaagagtgctaaggaaagaagaaatcgg
aggaagaaaagaaaacagaaagagcagtctggtggggaagagaaagatgaggatgaattc
ccaaaatctgaatctgaggacagcatcaggaggaaaggttttcgcttctccattgaaggg
aaccgattgacatatgaaaagaggtactcttccccacaccagtctttgttgagcatccgt
ggctccctattttcaccaaggcgaaatagcagaacaagccttttcagctttagagggcga
gcaaaggatgtgggatctgagaacgacttcgcagatgatgagcacagcacctttgaggat
aacgagagccgtagagattccttgtttgtgccccgacgacatggagagagacgcaacagc
aacctgagtcagaccagtaggtcatcccggatgctggcagtgtttccagcgaatgggaag
atgcacagcactgtggattgcaatggtgtggtttccttggttggtggaccttcagttcct
acatcgcctgttggacagcttctgccagagggaacaactactgaaactgaaatgagaaag
agaaggtcaagttctttccacgtttccatggactttctagaagatccttcccaaaggcaa
cgagcaatgagtatagccagcattctaacaaatacagtagaagaacttgaagaatccagg
cagaaatgcccaccctgttggtataaattttccaacatattcttaatctgggactgttct
ccatattggttaaaagtgaaacatgttgtcaacctggtcgtgatggacccatttgttgac
ctggccatcaccatctgtattgtcttaaatactcttttcatggccatggagcactatcca
atgacggaccatttcaataatgtgcttacagtaggaaacttggttttcactgggatcttt
acagcagaaatgtttctgaaaattattgccatggatccttactattatttccaagaaggc
tggaatatctttgacggttttattgtgacgcttagcctggtagaacttggactcgccaat
gtggaaggattatctgttctccgttcatttcgattgctgcgagttttcaagttggcaaaa
tcttggccaacgttaaatatgctaataaagatcatcggcaattccgtgggggctctggga
aatttaactctcgtcttggccatcatcgtcttcatttttgccgtggtcggcatgcagctc
tttggtaaaagctacaaagattgtgtctgcaagatcgccagtgattgtcaactcccacgc
tggcacatgaatgacttcttccactccttcctgattgtgttccgcgtgctgtgtggggag
tggatagagaccatgtgggactgtatggaggttgctggtcaagccatgtgccttactgtc
ttcatgatggtcatggtgattggaaacctagtggtcctgaatctctttctggccttgctt
ctgagctcatttagtgcagacaaccttgcagccactgatgatgataatgaaatgaataat
ctccaaattgctgtggataggatgcacaaaggagtagcttatgtgaaaagaaaaatatat
gaatttattcaacagtccttcattaggaaacaaaagattttagatgaaattaaaccactt
gatgatctaaacaacaagaaagacagttgtatgtccaatcatacaacagaaattgggaaa
gatcttgactatcttaaagatgtaaatggaactacaagtggtataggaactggcagcagt
gttgaaaaatacattattgatgaaagtgattacatgtcattcataaacaaccccagtctt
actgtgaccgtaccaattgctgtaggagaatctgactttgaaaatttaaacacggaagac
tttagtagtgaatcggatctggaagaaagcaaagagaaactgaatgaaagcagtagctca
tcagaaggtagcactgtggacatcggtgcacctgcagaagaacagcccgtagtggaacct
gaagaaacccttgaaccagaagcttgtttcactgaaggctgtgtacaaagattcaagtgt
tgtcaaatcaatgtggaagaaggtagaggaaaacaatggtggaacctgagaaggacgtgt
ttccgaatagttgaacataactggtttgagaccttcattgttttcatgattctccttagt
agtggtgctctggcatttgaagatatatatattgatcagcgaaagacgattaagacgatg
ttggaatatgctgacaaggttttcacttacattttcattctggaaatgcttctaaaatgg
gtggcatatggctatcaaacatatttcaccaatgcctggtgttggctggacttcttaatt
gttgatgtttcattggtcagtttaacagcaaatgccttgggttactcagaacttggagcc
atcaaatctctcaggacactaagagctctgagacctctaagagccttatctcgatttgaa
gggatgagggtggttgtgaatgcccttttaggagcaattccatccatcatgaatgtgctt
ctggtttgtcttatattctggctaattttcagcatcatgggcgtaaatttgtttgctggc
aaattctaccactgtattaacaccacaactggtgacaggtttgacatcgaagacgtgaat
aatcatactgattgcctaaaactaatagaaagaaatgagactgctcgatggaaaaatgtg
aaagtaaactttgataatgtaggatttgggtatctctctttgcttcaagttgccacattc
aaaggatggatggatataatgtatgcagcagttgattccagaaatgtggaactccagcct
aagtatgaagaaagtctgtacatgtatctttactttgttattttcatcatctttgggtcc
ttcttcaccttgaacctgtttattggtgtcatcatagataatttcaaccagcagaaaaag
aagtttggaggtcaagacatctttatgacagaagaacagaagaaatactataatgcaatg
aaaaaattaggatcgaaaaaaccgcaaaagcctatacctcgaccaggaaacaaatttcaa
ggaatggtctttgacttcgtaaccagacaagtttttgacataagcatcatgattctcatc
tgtcttaacatggtcacaatgatggtggaaacagatgaccagagtgaatatgtgactacc
attttgtcgcgcatcaatctggtgttcattgtgctgtttactggagagtgtgtactgaaa
ctcatctctctacgccattattattttaccattggatggaatatttttgattttgtggtt
gtcattctctccattgtaggtatgtttcttgccgagctgatagaaaagtatttcgtgtcc
cctaccctgttccgagtgatccgtcttgctaggattggccgaatcctacgtctgatcaaa
ggagcaaaggggatccgcacgctgctctttgctttgatgatgtcccttcctgcattgttt
aacatcggcctcctactcttcctggtcatgttcatctacgccatctttgggatgtccaac
tttgcctatgttaagagggaagttgggatcgatgacatgttcaactttgagacctttggc
aacagcatgatctgcctgttccaaattacaacctctgctggctgggatggattgctagca
cccattctcaacagtaagccacccgactgtgaccctaataaagttaaccctggaagctca
gttaagggagattgtgggaacccatctgttggaattttcttttttgtcagttacatcatc
atatccttcctggttgtggtgaacatgtacatcgcggtcatcctggagaacttcagtgtt
gctactgaagaaagtgcagagcctctgagtgaggatgactttgagatgttctatgaggtt
tgggagaagtttgatcccgatgcaactcagttcatggaatttgaaaaattatctcagttt
gcagctgcgcttgaaccgcctctcaatctgccacaaccaaataaactccagctcattgcc
atggatttgcccatggtgagtggtgaccggatccactgtcttgatatcttatttgctttt
acaaagcgggttctaggagagagtggagagatggatgctctacgaatacagatggaagag
cgattcatggcttccaatccttccaaggtctcctatcagccaatcactactactttaaaa
cgaaaacaagaggaagtatctgctgtcattattcagcgtgcttacagacgccacctttta
aagcgaactgtaaaacaagcttcctttacgtacaataaaaacaaaatcaaaggtggggct
aatcttcttataaaagaagacatgataattgacagaataaatgaaaactctattacagaa
aaaactgatctgaccatgtccactgcagcttgtccgccttcctatgaccgggtgacaaag
ccaattgtggaaaaacatgagcaagaaggcaaagatgaaaaagccaaagggaaataa
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integrated database retrieval system
