Pan troglodytes (chimpanzee): 460022
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Entry
460022 CDS
T01005
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X7
KO
K17890
autophagy-related protein 16-1
Organism
ptr
Pan troglodytes (chimpanzee)
Pathway
ptr04136
Autophagy - other
ptr04140
Autophagy - animal
ptr04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
460022 (ATG16L1)
04136 Autophagy - other
460022 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
460022 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptr04131
]
460022 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
ptr03029
]
460022 (ATG16L1)
Membrane trafficking [BR:
ptr04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
460022 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
460022 (ATG16L1)
Mitochondrial biogenesis [BR:
ptr03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
460022 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
ANAPC4_WD40
ATG16
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WD40_RFWD3
eIF2A
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_SPT8
Ge1_WD40
Beta-prop_Nup120_160
Beta-prop_NWD2_C
Beta-prop_Vps41
TolB_like
WD40_like
Motif
Other DBs
NCBI-GeneID:
460022
NCBI-ProteinID:
XP_001149723
Ensembl:
ENSPTRG00000013051
VGNC:
10577
UniProt:
A0A6D2XIT2
A0A2I3S4W7
LinkDB
All DBs
Position
13:135456454..135500475
Genome browser
AA seq
444 aa
AA seq
DB search
MSSGLRAADFPRWKRHISEQLRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAQKLQAEK
HDVPNRHEIRRRQARLQKELAEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVRAISRAA
TRRSVSSFPVPQDNVDTHPGSGKEVRVPTTALCVFDAHDGEVNAVQFSPGSRLLATGGMD
RRVKLWEVFGEKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHT
LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVM
SGHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIK
QTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAV
AWSPSGSHVVSVDKGCKAVLWAQY
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgggcctccgcgccgctgacttcccccgctggaagcgccacatctcggagcaa
ctgaggcgccgggaccggctgcagagacaggcgttcgaggagatcatcctgcagtataac
aaattgctggaaaagtcagatcttcattcagtgttggcccagaaactacaggctgaaaag
catgacgtaccaaacaggcacgagataaggaggcggcaggcccggctgcagaaagagctt
gcagaagcagcaaaggaacctctaccagtcgaacaggatgatgacattgaggtcattgtg
gatgaaacttctgatcacacagaagagacctctcctgtgcgagccatcagcagagcagcc
acgagacgctctgtctcttccttcccagtcccccaggacaatgtggatactcatcctggt
tctggtaaagaagtgagggtaccaactactgccttgtgtgtcttcgatgcacatgatggg
gaagtcaacgctgtgcagttcagtccaggttcccggttactggccaccggaggcatggac
cgcagggttaagctttgggaagtatttggagaaaaatgtgagttcaagggttccctatct
ggcagtaatgcaggaattacaagcattgaatttgatagtgctggatcttacctcttagca
gcttcaaatgattttgcaagccgaatctggactgtggatgattatcgattacggcacaca
ctcacgggacacagtgggaaagtgctgtctgctaagttcctgctggacaatgcgcggatt
gtctcaggaagtcacgaccggactctcaaactctgggatctacgcagcaaagtctgcata
aagacagtgtttgcaggatccagttgcaatgatattgtctgcacagagcaatgtgtaatg
agtggacattttgacaagaaaattcgtttctgggacattcgatcagagagcatagttcga
gagatggagctgttgggaaagattactgccctggacttaaacccagaaaggactgagctc
ctgagctgctcccgtgatgacttgctaaaagttattgatctccgaacaaatgctatcaag
cagacattcagtgcacctgggttcaagtgcggctctgactggaccagagttgtcttcagc
cctgatggcagttacgtggcggcaggctctgctgagggctctctgtatatctggagtgtg
ctcacagggaaagtggaaaaggttctttcaaagcagcacagctcatccatcaatgcggtg
gcgtggtcgccctctggctcgcatgttgtcagtgtggacaaaggatgcaaagctgtgctg
tgggcacagtactga
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