Pan troglodytes (chimpanzee): 460275
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Entry
460275 CDS
T01005
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha isoform X1
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
ptr
Pan troglodytes (chimpanzee)
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ptr04040
]
460275 (SCN11A)
Ion channels [BR:
ptr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
460275 (SCN11A)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
460275
NCBI-ProteinID:
XP_016796235
Ensembl:
ENSPTRG00000014764
VGNC:
12182
UniProt:
H2QMB6
A0A6D2WSY7
LinkDB
All DBs
Position
2:complement(42848207..42958826)
Genome browser
AA seq
1667 aa
AA seq
DB search
MLATLFSMFIIGTVIINCVFMATGPAKNSNSNNTDIAECVFTGIYIFEALIKILARGFIL
DEFSFLRDPWNWLDSIVIGIAIVSYIPGITIKLLPLRTFRVFRALKAISVVSRLKVIVGA
LLRSVKKLVNVIILTFFCLSIFALVGQQLFMGSLNLKCISRDCKNISNPEAYDHCFEKKE
NSPEFKMCGIWMGNSACSIQYECKHTKINPDYNYTNFDNFGWSFLAMFRLMTQDSWEKLY
QQTLRTTGLYSVFFFIVVIFLGSFYLINLTLAVVTMAYEEQNKNVAAEIEAKEKMFQEAQ
QLLKEEKEALVAMGIDRSSLTSLETSYFTPKKRKLFGNKKRKSFFLRESGKDQPPGSDSD
EDCQKKPQLLEQTKRLSQNLSLDHFDEHGDPLQRQRALSAVSILTITMKEQEKSQEPCLP
CGENLASKYLMWNCCPQWLCVKKVLRTVMTDPFTELAITICIIINTVFLAMEHHKMEASF
EKMLNIGNLVFTSIFIAEMCLKIIALDPYHYFRRGWNIFDSIVALLSFADVMNCVLQKRS
WPFLRSFRVLRVFKLAKSWPTLNTLIKIIGNSVGALGSLTVVLVIVIFIFSVVGMQLFGH
SFNSRKSPKLCNPTGPTVSCLRHWHMGDFWHSFLVVFRILCGEWIENMWECMQEENTSSS
SLCVIVFILITVIGKLVVLNLFIALLLNSFSNEERNGNLEGEARKTKVQLALDRFRRAFC
FVRHTLEHFCHKWCRKQNLPQQKEVTGGCAAQSKDIIPLVTEMKRGSETQEELGILTSVP
KTLGVRHDWTWLAPLAEEEDDVEFSGEDNAQRITQPESERQAYELHQENKKPTSQRVQSV
EIDMFSEDEPHLTIQDPRKKSDVTSILSECSTIDLQDGFGWLPEMVPKKQPERCLPKGFG
CCFPCCSVDKRKPPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIFEDVRLENQP
KIQELLNCTDIIFTHIFILEMVLKWVAFGFGKYFTSAWCCLDFIIVIVSVTTLINLMELK
SFRTLRALRPLRALSQFEGMKVVVNALIGAIPAILNVLLVCLIFWLVFCILGVYFFSGKF
GKCINGTDSVINYTIITNKSQCESGNFSWINQKVNFDNVGNAYLALLQVATFKGWMDIIY
AAVDSTEKEQQPAFESNSFGYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKLGGQDIF
MTEEQKKYYNAMKKLGSKKPQKPIPRPLNKCQGLVFDIVTSQIFDIIIISLIILNMISMM
AESYNQPKAMKSILDHLNWVFVVIFTLECLIKIFALRQYYFTNGWNLFDCVVVLLSIVST
MISTLENQEHIPFPPTLFRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGLLL
FLIMFIYAILGMNWFSKVNPEAGIDDIFNFKSFASSMLCLFQISTSAGWDSLLSPMLRSK
ESCNSSSESCHLPGIATSYFVSYIIISFLIVVNMYIAVILENFNTATEESEDPLGEDDFD
IFYEVWEKFDPEATQFIKYSALSDFADALPEPLRVAKPNKYQFLVMDLPMVSEDRLHCMD
ILFAFTARVLGGSDGLDSMKAMMEEKFMEANPLKKLYEPIVTTTKRKEEERGAAIIQKAF
RKYMMKVTKGDQGDQNDLENRPHSPLQTLCNGDLSSFGVAKGKVHCD
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atgctggccacattgttcagcatgttcattatcggcaccgttatcatcaactgcgtgttc
atggctacagggcctgctaaaaacagcaacagcaacaatactgacattgcagagtgtgtc
ttcactgggatttatatttttgaagctttgattaaaatattggcaagaggtttcattctg
gatgagttttctttccttcgagatccatggaactggctggactccattgtcattggaata
gcgattgtgtcatatattccaggaatcaccatcaaactattgcccctgcgtaccttccgt
gtgttcagagctttgaaagcaatttcagtagtttcacgtctgaaggtcatcgtgggggcc
ttgctgcgctctgtgaagaagctggtcaacgtgattatcctcaccttcttttgcctcagc
atctttgccctggtaggtcagcagctcttcatgggaagtctgaacctgaaatgcatctca
agggactgtaaaaatatcagtaacccggaagcttatgaccattgctttgaaaagaaagaa
aattcacctgaattcaaaatgtgtggcatctggatgggtaacagtgcctgttccatacaa
tatgaatgtaagcacaccaaaattaatcctgactataattatacgaattttgacaacttt
ggctggtcttttcttgccatgttccggctgatgacccaagattcctgggagaagctttat
caacagaccctgcgtactactgggctctactcagtcttcttcttcattgtggtcattttc
ctgggctccttctacctgattaacttaaccctggctgttgttaccatggcatatgaggag
cagaacaagaatgtagctgcagagatagaggccaaggaaaagatgtttcaggaagcccag
cagctgttaaaggaggaaaaggaggctctggttgccatgggaattgacagaagttcactt
acttcccttgaaacatcatattttaccccaaaaaagagaaagctctttggtaataagaaa
aggaagtccttctttttgagagagtctgggaaagaccagcctcctgggtcagattctgat
gaagattgccaaaaaaagccacagctcctagagcaaaccaaacgactgtcccagaatcta
tcactggaccactttgatgagcatggagatcctctccaaaggcagagagcactgagtgct
gtcagcatcctcaccatcaccatgaaggaacaagaaaaatcacaagagccttgtctccct
tgcggagaaaacctggcatccaagtacctcatgtggaactgttgcccccagtggctgtgc
gttaagaaggtcctgagaactgtgatgactgacccatttactgagctggccatcaccatc
tgcatcatcatcaacactgtcttcttggccatggagcatcacaagatggaggccagtttt
gagaagatgttgaatatagggaatttggttttcactagcatttttatagcagaaatgtgc
ctaaaaatcattgcgctcgatccctaccactactttcgccgaggctggaatatttttgac
agcattgttgctcttctgagttttgcagatgtaatgaactgtgtacttcaaaagagaagc
tggccattcttgcgttccttcagagtgctcagggtcttcaagttagccaaatcctggcca
actttgaacacactaattaagataatcggcaactctgtcggagcccttggaagcctgact
gtggtcctggtcattgtgatctttattttctcggtagttggcatgcagctttttggccat
agcttcaattcccgaaagagtccaaaactctgtaacccgacaggcccgacagtctcatgt
ttacggcactggcacatgggggatttctggcactccttcctggtggtattccgcatcctc
tgcggggaatggatcgaaaatatgtgggaatgtatgcaagaagagaatacatcatcatca
tcattgtgtgttattgtcttcatattgatcacagtgataggaaaacttgtggtgctcaac
ctcttcattgccttactgctcaattcctttagcaatgaggaaagaaatggaaacttagaa
ggagaggccaggaaaactaaagtccagttagcactggatcgattccgccgggctttttgt
tttgtgagacacactcttgagcatttctgtcacaagtggtgcaggaagcaaaacttacca
cagcaaaaagaggtgacaggaggctgtgctgcacaaagcaaagacatcattcccctggtc
acggagatgaaaaggggctcagagacccaggaggagcttggtatactaacctctgtacca
aagaccctgggcgtcaggcatgattggacttggttggcaccacttgcggaggaggaagat
gatgttgaattttctggtgaagataatgcacagcgcatcacacaacctgagtctgaacga
caggcctatgagctccatcaggagaacaagaagcccaccagccagagagttcaaagtgtg
gaaattgacatgttctctgaagatgagcctcatctgaccatacaggatccccgaaagaag
tctgatgttaccagtatactatcagaatgtagcaccattgatcttcaggatggctttgga
tggttacctgagatggttcccaaaaagcaaccagagagatgtttgcccaaaggctttggt
tgctgctttccatgctgtagcgtggacaagagaaagcctccctgggtcatttggtggaac
ctgcggaaaacctgctaccaaatagtgaaacacagctggtttgagagctttattatcttt
gtgattctgctgagcagtggggcactgatatttgaagatgttcgccttgagaaccaaccc
aaaatccaagaattactaaattgtactgacattatttttacacatatttttatcctggag
atggtactaaaatgggtagccttcggatttggaaagtatttcaccagtgcctggtgctgc
cttgatttcatcattgtgattgtctctgtgaccaccctcattaacttaatggaattgaag
tccttccggactctacgagcactgaggcctcttcgtgcgctgtcccagtttgaaggaatg
aaggtggtggtcaatgctctcataggtgccatacctgccattctgaatgttttgcttgtc
tgcctcattttctggctcgtattttgtattctgggagtatacttcttttctggaaaattt
gggaaatgcattaatggaacagactcagttataaattataccatcattacaaataaaagt
caatgtgaaagtggcaatttctcttggatcaaccagaaagtcaactttgacaatgtggga
aatgcttacctcgctctgctgcaagtggcaacatttaagggctggatggatattatatat
gcagctgttgattccacagagaaagaacaacagccagcgtttgagagcaattcattcggt
tacatttacttcgtagtctttatcatctttggctcattcttcactctgaatctcttcatt
ggcgttatcattgacaacttcaaccaacagcagaaaaagttaggtggccaagacattttt
atgacagaagaacagaagaaatactataatgcaatgaaaaaattaggatccaaaaaacct
caaaaacccattccacggcctctgaacaaatgtcaaggtctcgtgttcgacatagtcaca
agccagatctttgacatcatcatcataagtctcattatcctaaacatgattagcatgatg
gctgaatcatacaaccaacccaaagccatgaaatccatccttgaccatctcaactgggtc
tttgtggtcatctttacattagaatgtctcatcaaaatctttgctttgaggcaatactac
ttcaccaatggctggaatttatttgactgtgtggtcgtgcttctttccattgttagtaca
atgatttctaccttggaaaatcaggagcacattcctttccctccgacgctcttcagaatt
gtccgcttggctcggattggccgaatcctgaggcttgtccgggctgcacgaggaatcagg
actctcctctttgctctgatgatgtcgcttccttctctgttcaacattggtcttctactc
tttctgattatgtttatctatgccattttgggtatgaactggttttccaaagtgaatcca
gaggctggaattgatgacatattcaacttcaagtcttttgccagcagcatgctctgtctc
ttccagataagcacatcagcaggttgggattccctgctcagccccatgctgcgatcaaaa
gaatcatgtaactcttcctcagaaagctgccacctccctggcatagccacatcctacttt
gtcagttacattatcatctcctttctcattgttgtcaacatgtacattgctgtgatttta
gagaacttcaatacagccactgaagaaagtgaggaccctttgggtgaagatgactttgac
atattttatgaagtgtgggaaaagtttgacccagaagcaacacaatttatcaaatattct
gccctttctgactttgctgatgccttgcctgagcctttgcgtgtcgcaaagccaaataaa
tatcaatttctagtaatggacttgcccatggtgagtgaagatcgcctccactgcatggat
attcttttcgccttcaccgctagggtactcggtggctctgatggcctagatagcatgaaa
gcaatgatggaagagaagttcatggaagccaatcctctcaagaagttgtatgaacccata
gtcaccaccaccaagagaaaggaagaggaaagaggtgctgctattattcaaaaggccttt
cgaaagtacatgatgaaggttaccaagggtgaccaaggtgaccaaaatgacttggaaaac
aggcctcattcaccactccagactctttgcaatggagacttgtctagctttggggtggcc
aagggcaaggtccactgtgactga
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integrated database retrieval system
