Pan troglodytes (chimpanzee): 460744
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Entry
460744 CDS
T01005
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X2
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ptr
Pan troglodytes (chimpanzee)
Pathway
ptr03008
Ribosome biogenesis in eukaryotes
ptr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
460744 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
460744 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptr03019
]
460744 (XRN1)
03009 Ribosome biogenesis [BR:
ptr03009
]
460744 (XRN1)
03016 Transfer RNA biogenesis [BR:
ptr03016
]
460744 (XRN1)
03036 Chromosome and associated proteins [BR:
ptr03036
]
460744 (XRN1)
Messenger RNA biogenesis [BR:
ptr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
460744 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
460744 (XRN1)
Ribosome biogenesis [BR:
ptr03009
]
Eukaryotic type
Pre-60S particles
RNases
460744 (XRN1)
Transfer RNA biogenesis [BR:
ptr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
460744 (XRN1)
Chromosome and associated proteins [BR:
ptr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
460744 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
460744
NCBI-ProteinID:
XP_001161640
Ensembl:
ENSPTRG00000015482
VGNC:
7141
LinkDB
All DBs
Position
2:complement(145514796..145659017)
Genome browser
AA seq
1705 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHHCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAVEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWAALDKNEGEMITSKDNLEDET
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
YWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRIDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWP
HLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEH
YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD
SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHQHSS
SSSVSSGHLGGLNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKMQHFQPTVQEKGAVL
PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEECKSPKAECWSQKMSNKQPNSGIEN
FLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEIKQI
ANEIPISSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQIPPVS
TPVTELSRICSLVGMPQPDFSFLRTPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALF
ALQQLGSLGMNFPLPSPVFANYPSAVPPGTIPPVFPPPTGWDHYGSNYALGAANIMPSSS
HLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFEN
KEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASFQVETASQGHSISHHK
STPISSSRRKSRKLAVNFGVSKPSE
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcagagcggtatccctgtctcagcgaagtg
gtgaaagagcatcagattcctgaatttgacaacttgtacctggatatgaatggaattata
catcactgctcccatcctaatgatgatgatgttcactttagaatttcagatgataaaatc
tttactgatatttttcactacctggaggtgttgtttcgcattattaaacccaggaaagtg
ttctttatggctgtagatggtgtggctcctcgagcaaaaatgaaccagcagcgtgggagg
cgttttaggtcagcaaaggaggcagaagacaaaattaaaaaggcagtagagaagggagaa
actcttcctacagaggccagatttgattccaactgtatcacaccaggaactgaatttatg
gccaggttacatgaacatctgaagtattttgtaaatatgaaaatttccacagacaagtca
tggcaaggagttaccatctacttctcaggccatgagactcctggagaaggagagcataaa
atcatggaatttatcagatccgagaaagcaaagccagatcatgatccaaacaccagacac
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcatgaggcacat
ttttctctcttaagagaagaagttcgatttggtggcaaaaaaacacaacgggtatgtgct
ccagaagaaactacatttcaccttctacacttgtctttaatgagagagtatattgactat
gagttttcagtattaaaagaaaagatcacatttaaatatgatattgaaaggataatagat
gattggattttgatggggtttcttgttggtaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatgttaccatcctgccagaa
cttgggggttatattaatgaaagtgggcacctcaacttacctcgatttgagaaatacctt
gtgaaactatcagattttgatcgggagcacttcagtgaagtttttgtggacctaaaatgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgtcgcagcagaagaa
gccaggaactacaaggaaaagaaaaagttaaagggccaggaaaattctctgtgttgggct
gctttagacaaaaatgaaggcgaaatgataacttctaaggataatttagaagatgagact
gaagatgatgacctatttgaaactgagtttagacaatataaaagaacatattacatgacg
aagatgggggttgacgtagtatctgatgactttctggctgatcaagctgcatgttatgtt
caggcaatacagtggattttgcactattactatcatggagttcagtcctggagctggtat
tatccttatcattatgcacctttcctgtctgatatacacaacatcagtacactcaaaatc
cattttgaactaggaaaaccttttaagccatttgaacagcttcttgctgtacttccagca
gccagcaaaaatttacttcctgcatgctaccagcatttgatgaccaatgaagactcacca
attatagaatattacccacctgattttaaaactgacctaaatgggaaacaacaggaatgg
gaagctgtggtgttaatcccttttattgatgagaagcgattattggaagccatggagaca
tgtaaccactccctcaaaaaggaagagaggaaaagaaaccaacatagtgagtgcctaatg
tactggtatgatagagacacagagtttatctatccttctccatggccagaaaagttccct
gccatagaacgatgttgtacaaggtataaaataatatccttagatgcttggcgtgtagac
ataaacaaaaacaaaataaccagaattgaccagaaagcattatatttctgtggatttcct
actctgaaacacatcaaacacaaattttttttgaagaaaagtggtgttcaagtattccag
caaagcagtcgtggagaaaacatgatgttggaaatcttagtggatgcagaatcagatgaa
cttaccgtagaaaatgtagcttcatcagtgcttggaaaatctgtctttgttaattggcct
caccttgaggaagctagagttgtggctgtatcagatggagaaactaagttttacttggaa
gaacctccaggaacacagaagctttattcaggaagaactgccccaccatctaaagtggtt
catcttggagataaagaacaatctaactgggcaaaagaagtacaaggaatttcagaacac
tacctgagaagaaaaggaataataataaatgaaacatctgcagttgtgtatgctcagtta
ctcacaggtcgtaaatatcaaataaatcaaaatggtgaagttcgtctagagaaacagtgg
tcaaaacaagttgttccttttgtttatcaaactattgtcaaggacatccgagctttcgac
tcccgtttctccaatatcaaaacattggatgatttgtttcctctgagaagtatggtcttt
atgctgggaactccctattatggctgcactggagaagttcaggattcaggtgatgtgatt
acagaaggtaggattcgtgtgattttcagcattccatgtgaacccaatcttgatgcttta
atacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttaaatctcaaattcaac
aagaaaaatgaggaggtacctggatatactaagaaagttggaagtgaatggatgtattca
tctgcagcagaacaacttctggcagagtacttagagagagctccagaactatttagttat
atagccaaaaatagccaagaggatgtgttctatgaagatgacatttggcctggagaaaat
gagaatggtgctgaaaaagttcaagaaattattacttggctaaaaggacatcctgtcagt
actttatctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaaatt
gaggaagaagtcgaaaagtgcaagcaaagaaagaataataagaaggtgcgagtaacagtg
aaaccccatttgctatacagacctttagaacagcaacatggagtcattcctgatcgggat
gcagaattttgtctttttgaccgtgttgtaaatgtgagagaaaacttctcagttccagtt
ggccttcgaggcaccatcataggaataaaaggagctaatagagaagccgatgtactattt
gaagtattatttgatgaagaatttcctggagggttaacaataagatgctcacctggtaga
ggttatcgactgccaacaagtgccttggtgaacctttctcatgggagtcgctctgaaact
ggaaatcagaagttgacagccatcgtaaaaccacaaccagctgtacatcaacatagctca
agttcatcagtttcctctgggcatttgggaggcctcaaccattcccctcaatcacttttt
gttcctactcaagtacctactaaagatgatgatgaattctgcaacatttggcagtcctta
cagggatctggaaagatgcaacactttcagccaactgtacaagagaagggtgcagttcta
cctcaagaaataagccaagtaaatcaacatcataaatctggctttaatgacaacagtgtt
aaatatcagcaaagaaaacatgaccctcacagaaaatttaaagaagagtgtaagagtcct
aaagctgagtgttggtcccaaaaaatgtccaataagcagcctaactctggaattgagaac
tttttagcatctttgaatatctccaaagaaaatgaagtacagtcatctcatcatggggag
cctccaagtgaagagcatttgtcaccacagtcatttgccatgggaacacggatgcttaaa
gaaattctaaaaattgatggctctaacactgtggaccataagaatgaaatcaaacagatt
gctaatgaaatccctatttcctctaacagaagagatgaatatggattaccctctcagcct
aaacaaaataagaaattagcatcttatatgaacaagcctcacagtgctaatgagtaccat
aatgttcagtctatggacaatatgtgttggcctgcccccagccagatccctcctgtatcc
acaccagtaactgaactttctcgaatttgttcccttgttggaatgccacaacctgatttc
tcctttcttaggacgccacagacaatgaccgtttgccaagtaaaattatctaatggctta
ctggtacatgggccacagtgccactctgaaaatgaagccaaagaaaaagctgcacttttt
gctttacaacagttgggctccttaggcatgaatttccctttgccttcaccagtatttgca
aattatccttcagctgtaccacctggaaccattcctccagtctttcccccacctactggc
tgggatcactatggaagcaactatgcattgggggcagctaatataatgccttcatcgtct
catctctttggctcaatgccatggggaccatcggtgccagttcctgggaagcccttccat
catactttatattctgggaccatgcccatggctgggggaataccagggggtgtgcacaat
cagtttatacctctgcaggttactaaaaaaagggttgcaaacaaaaagaactttgagaat
aaggaagcccagagttctcaagccactccagttcagactagccagccagattcttccaac
attgtcaaagtaagtccacgggagagctcatcagcttctttgaagtcctctccgattgct
caacctgcatcttttcaagttgaaactgcctctcaaggccatagtatatctcatcataag
tcaacaccaatctcttcttcaagaagaaaatcaagaaaactggctgttaattttggtgtt
tctaaaccttctgagtaa
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integrated database retrieval system
